STRINGSTRING
Sdel_0064 Sdel_0064 lpxA lpxA Sdel_0200 Sdel_0200 Sdel_0203 Sdel_0203 lpxC lpxC Sdel_0430 Sdel_0430 Sdel_0664 Sdel_0664 lpxD lpxD lpxK lpxK kdsB kdsB Sdel_1652 Sdel_1652 Sdel_1743 Sdel_1743 kdsA kdsA Sdel_1805 Sdel_1805 Sdel_1807 Sdel_1807 Sdel_1808 Sdel_1808 Sdel_1810 Sdel_1810 Sdel_1811 Sdel_1811 gmhA gmhA hldE hldE Sdel_1814 Sdel_1814 Sdel_1815 Sdel_1815 Sdel_2037 Sdel_2037
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sdel_0064KpsF/GutQ family protein; KEGG: nis:NIS_0063 arabinose-5-phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; SMART: CBS domain containing protein; Belongs to the SIS family. GutQ/KpsF subfamily. (321 aa)
lpxAacyl-(acyl-carrier-protein)--UDP-N-acetylglucosa mineO-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. (263 aa)
Sdel_0200lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. (343 aa)
Sdel_0203KEGG: cla:Cla_1371 hypothetical protein. (246 aa)
lpxCUDP-3-0-acyl N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. (294 aa)
Sdel_0430PFAM: protein of unknown function DUF374; KEGG: nis:NIS_1482 hypothetical protein. (209 aa)
Sdel_0664TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: nis:NIS_0778 YrbI family phosphatase. (165 aa)
lpxDUDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. (317 aa)
lpxKTetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). (312 aa)
kdsB3-deoxy-D-manno- octulosonatecytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. (237 aa)
Sdel_1652Three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. (391 aa)
Sdel_1743PFAM: Protein of unknown function DUF2219; KEGG: sun:SUN_0271 hypothetical protein. (315 aa)
kdsATIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: cjr:CJE0433 2-dehydro-3-deoxyphosphooctonate aldolase. (266 aa)
Sdel_1805PFAM: glycosyl transferase family 9; KEGG: abu:Abu_1800 lipopolysaccharide heptosyltransferase II. (308 aa)
Sdel_1807Hypothetical protein; KEGG: msu:MS1964 3-deoxy-D-manno-octulosonic-acid kinase. (252 aa)
Sdel_1808TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: tdn:Suden_0589 lipopolysaccharide heptosyltransferase I. (327 aa)
Sdel_1810PFAM: lipid A biosynthesis acyltransferase; KEGG: ccv:CCV52592_1229 lipid A biosynthesis lauroyl acyltransferase. (306 aa)
Sdel_1811PFAM: O-antigen polymerase; KEGG: tdn:Suden_1699 O-antigen polymerase. (417 aa)
gmhAPhosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate. (188 aa)
hldErfaE bifunctional protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family. (472 aa)
Sdel_1814TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; KEGG: nam:NAMH_1711 ADP-L-glycero-D-manno-heptose-6- epimerase. (337 aa)
Sdel_1815TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: nis:NIS_1450 D-glycero-D-manno-heptose 1,7- bisphosphate phosphatase. (169 aa)
Sdel_2037PFAM: sulfatase; protein of unknown function DUF1705; KEGG: wsu:WS0643 hypothetical protein. (518 aa)
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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