STRINGSTRING
dnaA dnaA Sdel_0019 Sdel_0019 Sdel_0104 Sdel_0104 Sdel_0107 Sdel_0107 Sdel_0112 Sdel_0112 Sdel_0113 Sdel_0113 Sdel_0117 Sdel_0117 Sdel_0118 Sdel_0118 Sdel_0204 Sdel_0204 Sdel_0205 Sdel_0205 Sdel_0206 Sdel_0206 Sdel_0262 Sdel_0262 Sdel_0296 Sdel_0296 Sdel_0366 Sdel_0366 Sdel_0390 Sdel_0390 Sdel_0394 Sdel_0394 Sdel_0395 Sdel_0395 Sdel_0396 Sdel_0396 Sdel_0445 Sdel_0445 Sdel_0446 Sdel_0446 Sdel_0447 Sdel_0447 Sdel_0449 Sdel_0449 Sdel_0555 Sdel_0555 Sdel_0556 Sdel_0556 Sdel_0588 Sdel_0588 Sdel_0617 Sdel_0617 Sdel_0631 Sdel_0631 Sdel_0710 Sdel_0710 Sdel_0734 Sdel_0734 Sdel_0736 Sdel_0736 Sdel_0739 Sdel_0739 Sdel_0740 Sdel_0740 Sdel_0741 Sdel_0741 Sdel_0742 Sdel_0742 Sdel_0743 Sdel_0743 Sdel_0819 Sdel_0819 Sdel_0835 Sdel_0835 Sdel_0836 Sdel_0836 Sdel_0892 Sdel_0892 Sdel_0894 Sdel_0894 Sdel_0977 Sdel_0977 Sdel_0985 Sdel_0985 Sdel_1022 Sdel_1022 Sdel_1073 Sdel_1073 Sdel_1104 Sdel_1104 Sdel_1168 Sdel_1168 Sdel_1180 Sdel_1180 Sdel_1205 Sdel_1205 Sdel_1225 Sdel_1225 Sdel_1333 Sdel_1333 Sdel_1383 Sdel_1383 Sdel_1432 Sdel_1432 Sdel_1434 Sdel_1434 Sdel_1461 Sdel_1461 Sdel_1494 Sdel_1494 csrA csrA Sdel_1661 Sdel_1661 glnD glnD Sdel_1727 Sdel_1727 Sdel_1734 Sdel_1734 Sdel_1735 Sdel_1735 Sdel_1763 Sdel_1763 Sdel_1817 Sdel_1817 Sdel_1826 Sdel_1826 Sdel_1831 Sdel_1831 Sdel_1859 Sdel_1859 Sdel_1860 Sdel_1860 Sdel_1874 Sdel_1874 Sdel_1876 Sdel_1876 Sdel_1916 Sdel_1916 Sdel_1917 Sdel_1917 Sdel_1918 Sdel_1918 Sdel_1919 Sdel_1919 Sdel_1921 Sdel_1921 Sdel_1930 Sdel_1930 Sdel_1931 Sdel_1931 Sdel_1980 Sdel_1980 cheB cheB Sdel_1988 Sdel_1988 Sdel_1989 Sdel_1989 Sdel_1991 Sdel_1991 Sdel_1992 Sdel_1992 Sdel_1993 Sdel_1993 Sdel_2038 Sdel_2038 Sdel_2080 Sdel_2080 Sdel_2093 Sdel_2093 Sdel_2141 Sdel_2141 Sdel_2207 Sdel_2207 Sdel_2229 Sdel_2229 Sdel_2256 Sdel_2256
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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dnaAChromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (441 aa)
Sdel_0019PFAM: outer membrane porin; KEGG: wsu:WS0983 hypothetical protein. (402 aa)
Sdel_0104PFAM: nitrogen regulatory protein P-II; KEGG: abu:Abu_0198 nitrogen regulatory protein PII; Belongs to the P(II) protein family. (112 aa)
Sdel_0107PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: wsu:WS1034 putative two-component sensor. (540 aa)
Sdel_0112PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ccv:CCV52592_1331 methyl-accepting chemotaxis sensory transducer. (563 aa)
Sdel_0113PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ccv:CCV52592_1331 methyl-accepting chemotaxis sensory transducer. (563 aa)
Sdel_0117Cytochrome b/b6 domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (386 aa)
Sdel_0118PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: cjd:JJD26997_0543 ubiquinol--cytochrome c reductase, iron-sulfur subunit. (166 aa)
Sdel_0204PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver; KEGG: ccv:CCV52592_1656 ATP synthase gamma chain (ATP synthase F1 sector gammasubunit). (316 aa)
Sdel_0205PFAM: CheW domain protein; response regulator receiver; Signal transducing histidine kinase homodimeric; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: CheW domain protein; response regulator receiver; Hpt domain protein; ATP-binding region ATPase domain protein; KEGG: cff:CFF8240_0331 chemotaxis histidine kinase. (774 aa)
Sdel_0206PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: ccv:CCV52592_1658 purine-binding chemotaxis protein CheW. (164 aa)
Sdel_0262PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: nam:NAMH_1064 mcp-signal transduction protein. (650 aa)
Sdel_0296TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ccv:CCV52592_0370 flagellar biosynthesis sigma factor. (237 aa)
Sdel_0366PFAM: outer membrane porin; KEGG: wsu:WS0983 hypothetical protein. (403 aa)
Sdel_0390PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: nis:NIS_0011 transcriptional regulator. (218 aa)
Sdel_0394PFAM: Fumarate reductase respiratory complex; KEGG: abu:Abu_0301 fumarate reductase cytochrome b- 556 subunit. (260 aa)
Sdel_0395KEGG: ccv:CCV52592_2205 fumarate reductase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein. (661 aa)
Sdel_0396TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cco:CCC13826_0424 fumarate reductase iron- sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (240 aa)
Sdel_0445TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Citrate transporter; KEGG: abu:Abu_0361 C4-dicarboxylate transport protein. (427 aa)
Sdel_0446PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: wsu:WS1864 small integral C4-dicarboxylate membrane transport protein,putative. (187 aa)
Sdel_0447TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: abu:Abu_0359 C4-dicarboxylate-binding periplasmic protein. (329 aa)
Sdel_0449PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: abu:Abu_0362 two-component sensor histidine kinase. (532 aa)
Sdel_0555PFAM: sodium:dicarboxylate symporter; KEGG: abu:Abu_0187 C4-dicarboxylate transport protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (440 aa)
Sdel_0556PFAM: sodium:dicarboxylate symporter; KEGG: abu:Abu_0187 C4-dicarboxylate transport protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (442 aa)
Sdel_0588PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: nis:NIS_1346 two-component sensor histidine kinase/response regulator. (1068 aa)
Sdel_0617PFAM: outer membrane efflux protein; KEGG: tdn:Suden_0879 outer membrane efflux protein. (447 aa)
Sdel_0631PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: cco:CCC13826_1039 protease HtpX. (656 aa)
Sdel_0710PFAM: cyclic nucleotide-binding; KEGG: tdn:Suden_1512 cyclic nucleotide-binding domain-containing protein. (221 aa)
Sdel_0734PFAM: outer membrane porin; KEGG: wsu:WS0983 hypothetical protein. (384 aa)
Sdel_0736PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: cff:CFF8240_0140 two component transcriptional regulator. (236 aa)
Sdel_0739KEGG: abu:Abu_1316 putative cytochrome c. (97 aa)
Sdel_0740Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (166 aa)
Sdel_0741Cytochrome b/b6 domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (418 aa)
Sdel_0742KEGG: cco:CCC13826_1919 cytochrome c subfamily protein. (288 aa)
Sdel_0743PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: wsu:WS0657 two component response regulator. (218 aa)
Sdel_0819PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ccv:CCV52592_2035 putative transducer. (627 aa)
Sdel_0835Protein-glutamate O-methyltransferase; KEGG: ccv:CCV52592_1333 CheR methyltransferase SAM binding domain-containing protein; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type. (280 aa)
Sdel_0836PFAM: CheB methylesterase; KEGG: ccv:CCV52592_1332 chemotaxis response regulator protein-glutamate methylesterase. (189 aa)
Sdel_0892PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: cjr:CJE1664 DNA-binding response regulator. (233 aa)
Sdel_0894PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: tdn:Suden_0985 histidine kinase. (411 aa)
Sdel_0977PFAM: outer membrane efflux protein; KEGG: abu:Abu_0815 outer membrane efflux protein. (410 aa)
Sdel_0985PFAM: outer membrane efflux protein; KEGG: cha:CHAB381_1442 outer membrane efflux protein. (435 aa)
Sdel_1022RNA polymerase sigma-54 factor, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (423 aa)
Sdel_1073PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ccv:CCV52592_2035 putative transducer. (633 aa)
Sdel_1104TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: cla:Cla_0714 Ni/Fe hydrogenase, cytochrome b subunit. (225 aa)
Sdel_1168PFAM: MotA/TolQ/ExbB proton channel; KEGG: hpb:HELPY_0542 chemotaxis protein MotA (motility protein A); putative membrane protein. (258 aa)
Sdel_1180PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: wsu:WS0657 two component response regulator. (214 aa)
Sdel_1205PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: pca:Pcar_0439 methyl-accepting chemotaxis protein (MCP). (713 aa)
Sdel_1225PFAM: FecR protein; KEGG: abu:Abu_1429 sigma factor regulatory protein FecR/PupR family. (319 aa)
Sdel_1333KEGG: mmb:Mmol_1419 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein. (259 aa)
Sdel_1383Protease Do; KEGG: cff:CFF8240_0764 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; Belongs to the peptidase S1C family. (472 aa)
Sdel_1432PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: wsu:WS1923 putative methyl-accepting chemotaxis protein. (546 aa)
Sdel_1434PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: cff:CFF8240_0562 putative methyl-accepting chemotaxis protein. (530 aa)
Sdel_1461PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: abu:Abu_1290 two component system transcriptional regulatory protein. (233 aa)
Sdel_1494PFAM: nitrogen regulatory protein P-II; KEGG: tdn:Suden_0642 nitrogen regulatory protein P- II (GlnB, GlnK); Belongs to the P(II) protein family. (112 aa)
csrACarbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (75 aa)
Sdel_1661TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: cff:CFF8240_1054 glutamine synthetase, type I. (476 aa)
glnD(Protein-PII) uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism. (844 aa)
Sdel_1727Type I secretion outer membrane protein, TolC family; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family. (452 aa)
Sdel_1734PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: wsu:WS1853 cytochrome bd oxidase subunit I. (509 aa)
Sdel_1735TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: wsu:WS1852 cytochrome bd oxidase subunit II. (376 aa)
Sdel_1763PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: cjd:JJD26997_0603 chemotaxis protein CheY. (121 aa)
Sdel_1817PFAM: cytochrome c class I; KEGG: wsu:WS0700 hypothetical protein. (98 aa)
Sdel_1826PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: nam:NAMH_1064 mcp-signal transduction protein. (650 aa)
Sdel_1831Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (168 aa)
Sdel_1859KEGG: wsu:WS0948 periplasmic phosphate binding protein. (346 aa)
Sdel_1860PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: ccv:CCV52592_1331 methyl-accepting chemotaxis sensory transducer. (533 aa)
Sdel_1874PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: tdn:Suden_1558 histidine kinase. (467 aa)
Sdel_1876PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: nam:NAMH_1300 histidine kinase. (572 aa)
Sdel_1916Cytochrome c oxidase, Cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (282 aa)
Sdel_1917TIGRFAM: cytochrome c oxidase, cbb3-type, CcoQ subunit; PFAM: Cytochrome c oxidase cbb3-type CcoQ; KEGG: cha:CHAB381_1397 cytochrome c oxidase, Cbb3- type, CcoQ subunit. (71 aa)
Sdel_1918TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: cff:CFF8240_0379 cytochrome c oxidase, Cbb3- type, subunit II. (221 aa)
Sdel_1919KEGG: cla:Cla_0374 cytochrome c oxidase, cbb3-type, subunit I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family. (488 aa)
Sdel_1921PAS sensor protein; KEGG: nis:NIS_1620 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein. (407 aa)
Sdel_1930PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ccv:CCV52592_2035 putative transducer. (625 aa)
Sdel_1931PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ccv:CCV52592_2035 putative transducer. (621 aa)
Sdel_1980PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: abu:Abu_1358 response regulator receiver domain-containing protein. (126 aa)
cheBProtein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (341 aa)
Sdel_1988Protein-glutamate O-methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. (275 aa)
Sdel_1989PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; SMART: ATP-binding region ATPase domain protein; CheW domain protein; Hpt domain protein; KEGG: tdn:Suden_0974 CheA signal transduction histidine kinases. (678 aa)
Sdel_1991PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: wsu:WS0094 methyl-accepting chemotaxis protein II. (661 aa)
Sdel_1992PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: tdn:Suden_0971 CheW protein. (169 aa)
Sdel_1993PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: wsu:WS1077 putative two-component response regulator. (128 aa)
Sdel_2038PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: tdn:Suden_0316 histidine kinase. (473 aa)
Sdel_2080PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: tdn:Suden_0826 histidine kinase. (542 aa)
Sdel_2093PAS sensor protein; KEGG: bmn:BMA10247_A1432 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; SMART: PAS domain containing protein. (378 aa)
Sdel_2141PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ccv:CCV52592_1331 methyl-accepting chemotaxis sensory transducer. (708 aa)
Sdel_2207PFAM: flagellin domain protein; KEGG: cla:Cla_0567 flagellin. (239 aa)
Sdel_2229Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (481 aa)
Sdel_2256PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: wsu:WS0859 putative chemotaxis chemoreceptor MCPG. (548 aa)
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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