(57 nodes) Small-subunit processome, and Pectate lyase PlyH/PlyE-like network (Verticillium alfalfae)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00496	U3 small nucleolar RNA-associated protein. (481 aa)
	VDBG_01228	NUC153 domain-containing protein. (203 aa)
	VDBG_00509	Uncharacterized protein. (178 aa)
	VDBG_00572	U3 small nucleolar ribonucleoprotein IMP3. (183 aa)
	VDBG_01264	RNA helicase. (702 aa)
	VDBG_00634	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (125 aa)
	VDBG_00663	U3 small nucleolar ribonucleoprotein IMP4. (293 aa)
	VDBG_00772	Ribosome biogenesis protein BMS1. (1149 aa)
	VDBG_01358	Uncharacterized protein. (376 aa)
	RRP36	rRNA biogenesis protein RRP36; Component of the 90S pre-ribosome involved in the maturation of rRNAs. Required for early cleavages of the pre-RNAs in the 40S ribosomal subunit maturation pathway (By similarity). (299 aa)
	VDBG_00082	ATP-dependent RNA helicase DHX8. (1035 aa)
	VDBG_01476	Pectate lyase D. (234 aa)
	VDBG_02248	mRNA export factor elf1. (815 aa)
	VDBG_01602	WD repeat-containing protein. (399 aa)
	VDBG_01816	RTC domain-containing protein. (414 aa)
	VDBG_02921	Utp12 domain-containing protein. (207 aa)
	VDBG_03268	SIK1. (488 aa)
	VDBG_02629	ATP-dependent RNA helicase dbp8; Belongs to the DEAD box helicase family. (551 aa)
	VDBG_03436	U3 snoRNP protein. (366 aa)
	VDBG_04107	U3 small nucleolar RNA-associated protein. (906 aa)
	VDBG_04146	rRNA-processing protein FCF1. (200 aa)
	VDBG_04153	Ribosomal RNA-processing protein. (529 aa)
	VDBG_04244	Periodic tryptophan protein. (160 aa)
	VDBG_04255	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (753 aa)
	VDBG_03760	Sporulation protein. (968 aa)
	VDBG_04609	U3 small nucleolar RNA-associated protein. (568 aa)
	VDBG_04636	RNA-3'-phosphate cyclase family protein. (368 aa)
	VDBG_04709	Nucleolar complex protein. (546 aa)
	VDBG_04722	DOM34-interacting protein. (977 aa)
	VDBG_04763	Nucleolar complex protein. (897 aa)
	VDBG_04788	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43. (699 aa)
	VDBG_05033	DRIM domain-containing protein. (2566 aa)
	VDBG_04369	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (319 aa)
	VDBG_05386	SOF1. (448 aa)
	VDBG_05443	Nucleolar protein NOP58. (598 aa)
	VDBG_05544	Uncharacterized protein. (556 aa)
	VDBG_06394	ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family. (486 aa)
	VDBG_07338	U3 small nucleolar RNA-associated protein. (911 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1065 aa)
	VDBG_07366	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (269 aa)
	VDBG_06953	rRNA-processing protein FCF2. (225 aa)
	VDBG_07971	WD repeat-containing protein. (634 aa)
	VDBG_08041	Small nucleolar ribonucleoprotein complex subunit Utp14. (919 aa)
	VDBG_08393	Pre-rRNA-processing protein ESF2. (300 aa)
	VDBG_08464	Predicted protein. (344 aa)
	VDBG_08564	Pectate lyase C. (229 aa)
	VDBG_08247	U3 small nucleolar RNA-associated protein. (979 aa)
	VDBG_08685	U3 small nucleolar RNA-associated protein. (793 aa)
	VDBG_08686	U3 small nucleolar RNA-associated protein. (414 aa)
	VDBG_08895	Uncharacterized protein. (298 aa)
	VDBG_09119	Pectate lyase C. (232 aa)
	VDBG_09372	rRNA 2'-O-methyltransferase fibrillarin. (292 aa)
	VDBG_09681	Nucleolar essential protein. (196 aa)
	VDBG_09695	Predicted protein. (276 aa)
	VDBG_09738	U3 small nucleolar RNA-associated protein 22. (843 aa)
	VDBG_09789	Pectate lyase D. (231 aa)
	VDBG_10200	rRNA biogenesis protein RRP5. (1789 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAT10	RRP36	C9SQW2	C9S8J9	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	rRNA biogenesis protein RRP36; Component of the 90S pre-ribosome involved in the maturation of rRNAs. Required for early cleavages of the pre-RNAs in the 40S ribosomal subunit maturation pathway (By similarity).	0.444
NAT10	VDBG_00082	C9SQW2	C9S8L4	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	ATP-dependent RNA helicase DHX8.	0.938
NAT10	VDBG_00496	C9SQW2	C9S650	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	U3 small nucleolar RNA-associated protein.	0.967
NAT10	VDBG_00509	C9SQW2	C9S690	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.984
NAT10	VDBG_00572	C9SQW2	C9S6F2	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	U3 small nucleolar ribonucleoprotein IMP3.	0.942
NAT10	VDBG_00634	C9SQW2	C9S6N5	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.964
NAT10	VDBG_00663	C9SQW2	C9S6U4	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	U3 small nucleolar ribonucleoprotein IMP4.	0.997
NAT10	VDBG_00772	C9SQW2	C9S779	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Ribosome biogenesis protein BMS1.	0.999
NAT10	VDBG_01228	C9SQW2	C9S657	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	NUC153 domain-containing protein.	0.979
NAT10	VDBG_01264	C9SQW2	C9S6G8	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	RNA helicase.	0.827
NAT10	VDBG_01358	C9SQW2	C9S7N2	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.985
NAT10	VDBG_01476	C9SQW2	C9S8R7	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Pectate lyase D.	0.836
NAT10	VDBG_01602	C9SQW2	C9SAP5	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	WD repeat-containing protein.	0.998
NAT10	VDBG_01816	C9SQW2	C9SBH3	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	RTC domain-containing protein.	0.937
NAT10	VDBG_02248	C9SQW2	C9S9S6	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	mRNA export factor elf1.	0.960
NAT10	VDBG_02629	C9SQW2	C9SEC7	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	ATP-dependent RNA helicase dbp8; Belongs to the DEAD box helicase family.	0.701
NAT10	VDBG_02921	C9SQW2	C9SCJ7	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Utp12 domain-containing protein.	0.993
NAT10	VDBG_03268	C9SQW2	C9SDN9	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	SIK1.	0.994
NAT10	VDBG_03436	C9SQW2	C9SFJ4	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	U3 snoRNP protein.	0.993
NAT10	VDBG_03760	C9SQW2	C9SH57	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Sporulation protein.	0.987