(17 nodes) 90S preribosome, and t-UTP complex network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00496	U3 small nucleolar RNA-associated protein. (481 aa)
	VDBG_00509	Uncharacterized protein. (178 aa)
	VDBG_00572	U3 small nucleolar ribonucleoprotein IMP3. (183 aa)
	VDBG_00663	U3 small nucleolar ribonucleoprotein IMP4. (293 aa)
	VDBG_02921	Utp12 domain-containing protein. (207 aa)
	VDBG_03436	U3 snoRNP protein. (366 aa)
	VDBG_04107	U3 small nucleolar RNA-associated protein. (906 aa)
	VDBG_04244	Periodic tryptophan protein. (160 aa)
	VDBG_03760	Sporulation protein. (968 aa)
	VDBG_04609	U3 small nucleolar RNA-associated protein. (568 aa)
	VDBG_04722	DOM34-interacting protein. (977 aa)
	VDBG_05033	DRIM domain-containing protein. (2566 aa)
	VDBG_05443	Nucleolar protein NOP58. (598 aa)
	VDBG_07338	U3 small nucleolar RNA-associated protein. (911 aa)
	VDBG_08685	U3 small nucleolar RNA-associated protein. (793 aa)
	VDBG_09738	U3 small nucleolar RNA-associated protein 22. (843 aa)
	VDBG_10200	rRNA biogenesis protein RRP5. (1789 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00496	VDBG_00509	C9S650	C9S690	U3 small nucleolar RNA-associated protein.	Uncharacterized protein.	0.998
VDBG_00496	VDBG_00572	C9S650	C9S6F2	U3 small nucleolar RNA-associated protein.	U3 small nucleolar ribonucleoprotein IMP3.	0.985
VDBG_00496	VDBG_00663	C9S650	C9S6U4	U3 small nucleolar RNA-associated protein.	U3 small nucleolar ribonucleoprotein IMP4.	0.987
VDBG_00496	VDBG_02921	C9S650	C9SCJ7	U3 small nucleolar RNA-associated protein.	Utp12 domain-containing protein.	0.999
VDBG_00496	VDBG_03436	C9S650	C9SFJ4	U3 small nucleolar RNA-associated protein.	U3 snoRNP protein.	0.999
VDBG_00496	VDBG_03760	C9S650	C9SH57	U3 small nucleolar RNA-associated protein.	Sporulation protein.	0.999
VDBG_00496	VDBG_04107	C9S650	C9SFQ3	U3 small nucleolar RNA-associated protein.	U3 small nucleolar RNA-associated protein.	0.998
VDBG_00496	VDBG_04244	C9S650	C9SGI5	U3 small nucleolar RNA-associated protein.	Periodic tryptophan protein.	0.999
VDBG_00496	VDBG_04609	C9S650	C9SHS7	U3 small nucleolar RNA-associated protein.	U3 small nucleolar RNA-associated protein.	0.999
VDBG_00496	VDBG_04722	C9S650	C9SI40	U3 small nucleolar RNA-associated protein.	DOM34-interacting protein.	0.998
VDBG_00496	VDBG_05033	C9S650	C9SJ01	U3 small nucleolar RNA-associated protein.	DRIM domain-containing protein.	0.994
VDBG_00496	VDBG_05443	C9S650	C9SKW6	U3 small nucleolar RNA-associated protein.	Nucleolar protein NOP58.	0.999
VDBG_00496	VDBG_07338	C9S650	C9SQV3	U3 small nucleolar RNA-associated protein.	U3 small nucleolar RNA-associated protein.	0.999
VDBG_00496	VDBG_08685	C9S650	C9SUW0	U3 small nucleolar RNA-associated protein.	U3 small nucleolar RNA-associated protein.	0.998
VDBG_00496	VDBG_09738	C9S650	C9SXW3	U3 small nucleolar RNA-associated protein.	U3 small nucleolar RNA-associated protein 22.	0.994
VDBG_00496	VDBG_10200	C9S650	C9SZ75	U3 small nucleolar RNA-associated protein.	rRNA biogenesis protein RRP5.	0.985
VDBG_00509	VDBG_00496	C9S690	C9S650	Uncharacterized protein.	U3 small nucleolar RNA-associated protein.	0.998
VDBG_00509	VDBG_00572	C9S690	C9S6F2	Uncharacterized protein.	U3 small nucleolar ribonucleoprotein IMP3.	0.999
VDBG_00509	VDBG_00663	C9S690	C9S6U4	Uncharacterized protein.	U3 small nucleolar ribonucleoprotein IMP4.	0.999
VDBG_00509	VDBG_02921	C9S690	C9SCJ7	Uncharacterized protein.	Utp12 domain-containing protein.	0.999