(29 nodes) Transcription factor TFIIIC complex, and RNA polymerase II transcribes snRNA genes network (Verticillium alfalfae)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00637	Uncharacterized protein. (384 aa)
	VDBG_01285	Uncharacterized protein. (436 aa)
	VDBG_00672	Uncharacterized protein. (583 aa)
	VDBG_00701	Uncharacterized protein. (196 aa)
	VDBG_00702	Predicted protein. (372 aa)
	VDBG_00978	Oxidoreductase 2-nitropropane dioxygenase family. (235 aa)
	VDBG_00022	B-block_TFIIIC domain-containing protein. (1988 aa)
	VDBG_00166	Zinc finger protein. (439 aa)
	VDBG_02512	C2H2 type zinc finger domain-containing protein. (139 aa)
	VDBG_02513	C2H2 type zinc finger domain-containing protein. (559 aa)
	VDBG_02729	HET domain-containing protein. (618 aa)
	VDBG_04047	Transcription factor tau subunit sfc1. (336 aa)
	VDBG_04048	Uncharacterized protein. (257 aa)
	VDBG_03566	Uncharacterized protein. (153 aa)
	VDBG_03577	Predicted protein. (229 aa)
	VDBG_04796	Zn(2)-C6 fungal-type domain-containing protein. (643 aa)
	VDBG_04878	Zinc finger protein. (383 aa)
	VDBG_05522	Uncharacterized protein. (230 aa)
	VDBG_06293	Uncharacterized protein. (110 aa)
	VDBG_06294	Uncharacterized protein. (470 aa)
	VDBG_07254	Predicted protein. (554 aa)
	VDBG_07858	C2H2 type zinc finger domain-containing protein. (267 aa)
	VDBG_08109	Regulatory protein. (93 aa)
	VDBG_08110	C2H2-type domain-containing protein. (81 aa)
	VDBG_08132	2-nitropropane dioxygenase. (330 aa)
	VDBG_08480	C2H2 type zinc finger domain-containing protein. (423 aa)
	VDBG_08790	Zinc finger protein. (451 aa)
	VDBG_08846	Phosphoglycerate mutase family protein. (350 aa)
	VDBG_10123	BTB/POZ domain-containing protein. (306 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00022	VDBG_04047	C9S8A5	C9SFF2	B-block_TFIIIC domain-containing protein.	Transcription factor tau subunit sfc1.	0.945
VDBG_00022	VDBG_04048	C9S8A5	C9SFF3	B-block_TFIIIC domain-containing protein.	Uncharacterized protein.	0.918
VDBG_00022	VDBG_06293	C9S8A5	C9SN18	B-block_TFIIIC domain-containing protein.	Uncharacterized protein.	0.866
VDBG_00022	VDBG_06294	C9S8A5	C9SN19	B-block_TFIIIC domain-containing protein.	Uncharacterized protein.	0.866
VDBG_00022	VDBG_08790	C9S8A5	C9SV65	B-block_TFIIIC domain-containing protein.	Zinc finger protein.	0.554
VDBG_00022	VDBG_08846	C9S8A5	C9SVC1	B-block_TFIIIC domain-containing protein.	Phosphoglycerate mutase family protein.	0.684
VDBG_02512	VDBG_02513	C9SDA1	C9SDA2	C2H2 type zinc finger domain-containing protein.	C2H2 type zinc finger domain-containing protein.	0.945
VDBG_02513	VDBG_02512	C9SDA2	C9SDA1	C2H2 type zinc finger domain-containing protein.	C2H2 type zinc finger domain-containing protein.	0.945
VDBG_04047	VDBG_00022	C9SFF2	C9S8A5	Transcription factor tau subunit sfc1.	B-block_TFIIIC domain-containing protein.	0.945
VDBG_04047	VDBG_04048	C9SFF2	C9SFF3	Transcription factor tau subunit sfc1.	Uncharacterized protein.	0.897
VDBG_04047	VDBG_06293	C9SFF2	C9SN18	Transcription factor tau subunit sfc1.	Uncharacterized protein.	0.763
VDBG_04047	VDBG_06294	C9SFF2	C9SN19	Transcription factor tau subunit sfc1.	Uncharacterized protein.	0.763
VDBG_04047	VDBG_08790	C9SFF2	C9SV65	Transcription factor tau subunit sfc1.	Zinc finger protein.	0.410
VDBG_04047	VDBG_08846	C9SFF2	C9SVC1	Transcription factor tau subunit sfc1.	Phosphoglycerate mutase family protein.	0.721
VDBG_04048	VDBG_00022	C9SFF3	C9S8A5	Uncharacterized protein.	B-block_TFIIIC domain-containing protein.	0.918
VDBG_04048	VDBG_04047	C9SFF3	C9SFF2	Uncharacterized protein.	Transcription factor tau subunit sfc1.	0.897
VDBG_04048	VDBG_06293	C9SFF3	C9SN18	Uncharacterized protein.	Uncharacterized protein.	0.763
VDBG_04048	VDBG_06294	C9SFF3	C9SN19	Uncharacterized protein.	Uncharacterized protein.	0.763
VDBG_04048	VDBG_08790	C9SFF3	C9SV65	Uncharacterized protein.	Zinc finger protein.	0.410
VDBG_04048	VDBG_08846	C9SFF3	C9SVC1	Uncharacterized protein.	Phosphoglycerate mutase family protein.	0.721