(17 nodes) Mixed, incl. Transcription factor TFIIIC complex, and Host cell network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00637	Uncharacterized protein. (384 aa)
	VDBG_00672	Uncharacterized protein. (583 aa)
	VDBG_00701	Uncharacterized protein. (196 aa)
	VDBG_00702	Predicted protein. (372 aa)
	VDBG_00022	B-block_TFIIIC domain-containing protein. (1988 aa)
	VDBG_00166	Zinc finger protein. (439 aa)
	VDBG_02729	HET domain-containing protein. (618 aa)
	VDBG_04047	Transcription factor tau subunit sfc1. (336 aa)
	VDBG_04048	Uncharacterized protein. (257 aa)
	VDBG_03566	Uncharacterized protein. (153 aa)
	VDBG_03577	Predicted protein. (229 aa)
	VDBG_06293	Uncharacterized protein. (110 aa)
	VDBG_06294	Uncharacterized protein. (470 aa)
	VDBG_08480	C2H2 type zinc finger domain-containing protein. (423 aa)
	VDBG_08790	Zinc finger protein. (451 aa)
	VDBG_08846	Phosphoglycerate mutase family protein. (350 aa)
	VDBG_10123	BTB/POZ domain-containing protein. (306 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00022	VDBG_04047	C9S8A5	C9SFF2	B-block_TFIIIC domain-containing protein.	Transcription factor tau subunit sfc1.	0.945
VDBG_00022	VDBG_04048	C9S8A5	C9SFF3	B-block_TFIIIC domain-containing protein.	Uncharacterized protein.	0.918
VDBG_00022	VDBG_06293	C9S8A5	C9SN18	B-block_TFIIIC domain-containing protein.	Uncharacterized protein.	0.866
VDBG_00022	VDBG_06294	C9S8A5	C9SN19	B-block_TFIIIC domain-containing protein.	Uncharacterized protein.	0.866
VDBG_00022	VDBG_08790	C9S8A5	C9SV65	B-block_TFIIIC domain-containing protein.	Zinc finger protein.	0.554
VDBG_00022	VDBG_08846	C9S8A5	C9SVC1	B-block_TFIIIC domain-containing protein.	Phosphoglycerate mutase family protein.	0.684
VDBG_04047	VDBG_00022	C9SFF2	C9S8A5	Transcription factor tau subunit sfc1.	B-block_TFIIIC domain-containing protein.	0.945
VDBG_04047	VDBG_04048	C9SFF2	C9SFF3	Transcription factor tau subunit sfc1.	Uncharacterized protein.	0.897
VDBG_04047	VDBG_06293	C9SFF2	C9SN18	Transcription factor tau subunit sfc1.	Uncharacterized protein.	0.763
VDBG_04047	VDBG_06294	C9SFF2	C9SN19	Transcription factor tau subunit sfc1.	Uncharacterized protein.	0.763
VDBG_04047	VDBG_08790	C9SFF2	C9SV65	Transcription factor tau subunit sfc1.	Zinc finger protein.	0.410
VDBG_04047	VDBG_08846	C9SFF2	C9SVC1	Transcription factor tau subunit sfc1.	Phosphoglycerate mutase family protein.	0.721
VDBG_04048	VDBG_00022	C9SFF3	C9S8A5	Uncharacterized protein.	B-block_TFIIIC domain-containing protein.	0.918
VDBG_04048	VDBG_04047	C9SFF3	C9SFF2	Uncharacterized protein.	Transcription factor tau subunit sfc1.	0.897
VDBG_04048	VDBG_06293	C9SFF3	C9SN18	Uncharacterized protein.	Uncharacterized protein.	0.763
VDBG_04048	VDBG_06294	C9SFF3	C9SN19	Uncharacterized protein.	Uncharacterized protein.	0.763
VDBG_04048	VDBG_08790	C9SFF3	C9SV65	Uncharacterized protein.	Zinc finger protein.	0.410
VDBG_04048	VDBG_08846	C9SFF3	C9SVC1	Uncharacterized protein.	Phosphoglycerate mutase family protein.	0.721
VDBG_06293	VDBG_00022	C9SN18	C9S8A5	Uncharacterized protein.	B-block_TFIIIC domain-containing protein.	0.866
VDBG_06293	VDBG_04047	C9SN18	C9SFF2	Uncharacterized protein.	Transcription factor tau subunit sfc1.	0.763