(23 nodes) Mixed, incl. Velvet factor, and PAS fold-2 network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00362	Cell pattern formation-associated protein stuA. (721 aa)
	VDBG_00527	Sexual development transcription factor NsdD. (384 aa)
	VDBG_00980	NDT80 domain-containing protein. (566 aa)
	VDBG_01778	Uncharacterized protein. (352 aa)
	VDBG_02568	VeA protein. (283 aa)
	VDBG_03770	TEA domain-containing protein. (831 aa)
	VDBG_04492	VelB. (362 aa)
	VDBG_04717	C2H2 finger domain containing protein FlbC. (401 aa)
	VDBG_05786	C2H2-type domain-containing protein. (393 aa)
	VDBG_06283	Predicted protein. (255 aa)
	VDBG_06284	Uncharacterized protein. (598 aa)
	VDBG_06285	Predicted protein. (135 aa)
	VDBG_07119	VeA protein. (183 aa)
	VDBG_07373	Regulator of secondary metabolism LaeA. (345 aa)
	VDBG_07445	Uncharacterized protein. (986 aa)
	VDBG_07479	Uncharacterized protein. (282 aa)
	VDBG_07480	Uncharacterized protein. (158 aa)
	VDBG_07852	VosA. (342 aa)
	VDBG_08842	Uncharacterized protein. (283 aa)
	VDBG_09308	Predicted protein. (644 aa)
	VDBG_09309	Ethylene receptor. (895 aa)
	VDBG_09326	MYB-1. (304 aa)
	VDBG_09798	Predicted protein. (207 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00362	VDBG_00527	C9S5M9	C9S6A7	Cell pattern formation-associated protein stuA.	Sexual development transcription factor NsdD.	0.468
VDBG_00362	VDBG_00980	C9S5M9	C9S825	Cell pattern formation-associated protein stuA.	NDT80 domain-containing protein.	0.424
VDBG_00362	VDBG_03770	C9S5M9	C9SH67	Cell pattern formation-associated protein stuA.	TEA domain-containing protein.	0.654
VDBG_00362	VDBG_07119	C9S5M9	C9SQ84	Cell pattern formation-associated protein stuA.	VeA protein.	0.577
VDBG_00362	VDBG_07373	C9S5M9	C9SQY8	Cell pattern formation-associated protein stuA.	Regulator of secondary metabolism LaeA.	0.513
VDBG_00362	VDBG_08842	C9S5M9	C9SVB7	Cell pattern formation-associated protein stuA.	Uncharacterized protein.	0.625
VDBG_00527	VDBG_00362	C9S6A7	C9S5M9	Sexual development transcription factor NsdD.	Cell pattern formation-associated protein stuA.	0.468
VDBG_00980	VDBG_00362	C9S825	C9S5M9	NDT80 domain-containing protein.	Cell pattern formation-associated protein stuA.	0.424
VDBG_00980	VDBG_03770	C9S825	C9SH67	NDT80 domain-containing protein.	TEA domain-containing protein.	0.506
VDBG_02568	VDBG_04492	C9SDX3	C9SHG0	VeA protein.	VelB.	0.571
VDBG_02568	VDBG_07373	C9SDX3	C9SQY8	VeA protein.	Regulator of secondary metabolism LaeA.	0.576
VDBG_03770	VDBG_00362	C9SH67	C9S5M9	TEA domain-containing protein.	Cell pattern formation-associated protein stuA.	0.654
VDBG_03770	VDBG_00980	C9SH67	C9S825	TEA domain-containing protein.	NDT80 domain-containing protein.	0.506
VDBG_03770	VDBG_04492	C9SH67	C9SHG0	TEA domain-containing protein.	VelB.	0.523
VDBG_03770	VDBG_07119	C9SH67	C9SQ84	TEA domain-containing protein.	VeA protein.	0.617
VDBG_03770	VDBG_08842	C9SH67	C9SVB7	TEA domain-containing protein.	Uncharacterized protein.	0.497
VDBG_04492	VDBG_02568	C9SHG0	C9SDX3	VelB.	VeA protein.	0.571
VDBG_04492	VDBG_03770	C9SHG0	C9SH67	VelB.	TEA domain-containing protein.	0.523
VDBG_04492	VDBG_07119	C9SHG0	C9SQ84	VelB.	VeA protein.	0.710
VDBG_04492	VDBG_07373	C9SHG0	C9SQY8	VelB.	Regulator of secondary metabolism LaeA.	0.635