(17 nodes) Nuclear-transcribed mRNA catabolic process, exonucleolytic, 3-5, and Sas10/Utp3/C1D network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00262	Exosome complex exonuclease RRP4. (353 aa)
	VDBG_00345	Uncharacterized protein. (228 aa)
	VDBG_00700	Exosome complex exonuclease RRP40. (245 aa)
	VDBG_02195	Exosome complex exonuclease RRP43. (340 aa)
	VDBG_01916	Antiviral helicase SKI2. (1242 aa)
	VDBG_02016	Uncharacterized protein. (181 aa)
	VDBG_04140	3'-5' exoribonuclease CSL4. (211 aa)
	VDBG_04141	Sec2p domain-containing protein. (324 aa)
	VDBG_03647	Superkiller protein. (1415 aa)
	VDBG_03680	RNase_PH domain-containing protein. (373 aa)
	VDBG_04433	Mitotic control protein dis3. (752 aa)
	VDBG_05820	ATP-dependent RNA helicase DOB1. (1107 aa)
	VDBG_05543	Meiotic recombination protein rec14. (310 aa)
	VDBG_05847	RNase_PH domain-containing protein. (249 aa)
	VDBG_06740	Exosome complex exonuclease RRP45. (271 aa)
	VDBG_08232	3' exoribonuclease family protein. (251 aa)
	VDBG_09932	Exosome complex exonuclease RRP41. (155 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00262	VDBG_00345	C9S555	C9S5J1	Exosome complex exonuclease RRP4.	Uncharacterized protein.	0.974
VDBG_00262	VDBG_00700	C9S555	C9S6Y1	Exosome complex exonuclease RRP4.	Exosome complex exonuclease RRP40.	0.999
VDBG_00262	VDBG_01916	C9S555	C9SBS3	Exosome complex exonuclease RRP4.	Antiviral helicase SKI2.	0.965
VDBG_00262	VDBG_02016	C9S555	C9SC23	Exosome complex exonuclease RRP4.	Uncharacterized protein.	0.999
VDBG_00262	VDBG_02195	C9S555	C9S9M3	Exosome complex exonuclease RRP4.	Exosome complex exonuclease RRP43.	0.999
VDBG_00262	VDBG_03647	C9S555	C9SGP3	Exosome complex exonuclease RRP4.	Superkiller protein.	0.931
VDBG_00262	VDBG_03680	C9S555	C9SGU9	Exosome complex exonuclease RRP4.	RNase_PH domain-containing protein.	0.999
VDBG_00262	VDBG_04140	C9S555	C9SFT6	Exosome complex exonuclease RRP4.	3'-5' exoribonuclease CSL4.	0.985
VDBG_00262	VDBG_04141	C9S555	C9SFT7	Exosome complex exonuclease RRP4.	Sec2p domain-containing protein.	0.969
VDBG_00262	VDBG_04433	C9S555	C9SJG2	Exosome complex exonuclease RRP4.	Mitotic control protein dis3.	0.941
VDBG_00262	VDBG_05543	C9S555	C9SL66	Exosome complex exonuclease RRP4.	Meiotic recombination protein rec14.	0.879
VDBG_00262	VDBG_05820	C9S555	C9SJU7	Exosome complex exonuclease RRP4.	ATP-dependent RNA helicase DOB1.	0.998
VDBG_00262	VDBG_05847	C9S555	C9SLS3	Exosome complex exonuclease RRP4.	RNase_PH domain-containing protein.	0.999
VDBG_00262	VDBG_06740	C9S555	C9SPB5	Exosome complex exonuclease RRP4.	Exosome complex exonuclease RRP45.	0.999
VDBG_00262	VDBG_08232	C9S555	C9SUL2	Exosome complex exonuclease RRP4.	3' exoribonuclease family protein.	0.998
VDBG_00262	VDBG_09932	C9S555	C9SYF7	Exosome complex exonuclease RRP4.	Exosome complex exonuclease RRP41.	0.999
VDBG_00345	VDBG_00262	C9S5J1	C9S555	Uncharacterized protein.	Exosome complex exonuclease RRP4.	0.974
VDBG_00345	VDBG_00700	C9S5J1	C9S6Y1	Uncharacterized protein.	Exosome complex exonuclease RRP40.	0.976
VDBG_00345	VDBG_01916	C9S5J1	C9SBS3	Uncharacterized protein.	Antiviral helicase SKI2.	0.839
VDBG_00345	VDBG_02016	C9S5J1	C9SC23	Uncharacterized protein.	Uncharacterized protein.	0.967