(10 nodes) Nucleolar ribonuclease P complex network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00697	Ribonucleases P/MRP protein subunit. (569 aa)
	VDBG_01416	Uncharacterized protein. (298 aa)
	VDBG_00072	Uncharacterized protein. (145 aa)
	VDBG_02269	Uncharacterized protein. (176 aa)
	VDBG_01771	Uncharacterized protein. (163 aa)
	VDBG_03727	Uncharacterized protein. (256 aa)
	VDBG_08371	Ribonuclease P protein subunit. (240 aa)
	VDBG_08238	Rpp14 family protein. (199 aa)
	VDBG_08649	Predicted protein. (140 aa)
	VDBG_08825	Uncharacterized protein. (237 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00072	VDBG_00697	C9S8K4	C9S6X8	Uncharacterized protein.	Ribonucleases P/MRP protein subunit.	0.900
VDBG_00072	VDBG_01416	C9S8K4	C9S857	Uncharacterized protein.	Uncharacterized protein.	0.900
VDBG_00072	VDBG_01771	C9S8K4	C9SBC8	Uncharacterized protein.	Uncharacterized protein.	0.906
VDBG_00072	VDBG_02269	C9S8K4	C9S9U7	Uncharacterized protein.	Uncharacterized protein.	0.900
VDBG_00072	VDBG_03727	C9S8K4	C9SH24	Uncharacterized protein.	Uncharacterized protein.	0.900
VDBG_00072	VDBG_08238	C9S8K4	C9SUL8	Uncharacterized protein.	Rpp14 family protein.	0.900
VDBG_00072	VDBG_08371	C9S8K4	C9STV0	Uncharacterized protein.	Ribonuclease P protein subunit.	0.900
VDBG_00072	VDBG_08825	C9S8K4	C9SVA0	Uncharacterized protein.	Uncharacterized protein.	0.900
VDBG_00697	VDBG_00072	C9S6X8	C9S8K4	Ribonucleases P/MRP protein subunit.	Uncharacterized protein.	0.900
VDBG_00697	VDBG_01416	C9S6X8	C9S857	Ribonucleases P/MRP protein subunit.	Uncharacterized protein.	0.971
VDBG_00697	VDBG_01771	C9S6X8	C9SBC8	Ribonucleases P/MRP protein subunit.	Uncharacterized protein.	0.999
VDBG_00697	VDBG_02269	C9S6X8	C9S9U7	Ribonucleases P/MRP protein subunit.	Uncharacterized protein.	0.999
VDBG_00697	VDBG_03727	C9S6X8	C9SH24	Ribonucleases P/MRP protein subunit.	Uncharacterized protein.	0.999
VDBG_00697	VDBG_08238	C9S6X8	C9SUL8	Ribonucleases P/MRP protein subunit.	Rpp14 family protein.	0.999
VDBG_00697	VDBG_08371	C9S6X8	C9STV0	Ribonucleases P/MRP protein subunit.	Ribonuclease P protein subunit.	0.999
VDBG_00697	VDBG_08649	C9S6X8	C9SUS4	Ribonucleases P/MRP protein subunit.	Predicted protein.	0.994
VDBG_00697	VDBG_08825	C9S6X8	C9SVA0	Ribonucleases P/MRP protein subunit.	Uncharacterized protein.	0.997
VDBG_01416	VDBG_00072	C9S857	C9S8K4	Uncharacterized protein.	Uncharacterized protein.	0.900
VDBG_01416	VDBG_00697	C9S857	C9S6X8	Uncharacterized protein.	Ribonucleases P/MRP protein subunit.	0.971
VDBG_01416	VDBG_01771	C9S857	C9SBC8	Uncharacterized protein.	Uncharacterized protein.	0.996