Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PAN2 | VDBG_01956 | C9SWJ6 | C9SBW3 | PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] | PAB-dependent poly(A)-specific ribonuclease subunit PAN3. | 0.999 |
| VDBG_00271 | VDBG_00650 | C9S564 | C9S6Q1 | HET domain-containing protein. | Nuclear envelope protein Cut8; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. | 0.401 |
| VDBG_00271 | VDBG_08225 | C9S564 | C9SUK5 | HET domain-containing protein. | tRNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.605 |
| VDBG_00271 | VDBG_08334 | C9S564 | C9STR3 | HET domain-containing protein. | RNA exonuclease. | 0.401 |
| VDBG_00606 | VDBG_01956 | C9S6K7 | C9SBW3 | RNA exonuclease. | PAB-dependent poly(A)-specific ribonuclease subunit PAN3. | 0.788 |
| VDBG_00606 | VDBG_06137 | C9S6K7 | C9SML3 | RNA exonuclease. | RNA exonuclease. | 0.900 |
| VDBG_00606 | VDBG_06170 | C9S6K7 | C9SMP6 | RNA exonuclease. | Oligoribonuclease. | 0.951 |
| VDBG_00650 | VDBG_00271 | C9S6Q1 | C9S564 | Nuclear envelope protein Cut8; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. | HET domain-containing protein. | 0.401 |
| VDBG_00650 | VDBG_01956 | C9S6Q1 | C9SBW3 | Nuclear envelope protein Cut8; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. | PAB-dependent poly(A)-specific ribonuclease subunit PAN3. | 0.788 |
| VDBG_00650 | VDBG_03015 | C9S6Q1 | C9SCU1 | Nuclear envelope protein Cut8; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. | PITH domain-containing protein. | 0.485 |
| VDBG_00650 | VDBG_06170 | C9S6Q1 | C9SMP6 | Nuclear envelope protein Cut8; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. | Oligoribonuclease. | 0.428 |
| VDBG_00650 | VDBG_08613 | C9S6Q1 | C9SUJ2 | Nuclear envelope protein Cut8; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. | D-lactonohydrolase. | 0.401 |
| VDBG_01857 | VDBG_08613 | C9SBL4 | C9SUJ2 | FAD-binding PCMH-type domain-containing protein. | D-lactonohydrolase. | 0.900 |
| VDBG_01956 | PAN2 | C9SBW3 | C9SWJ6 | PAB-dependent poly(A)-specific ribonuclease subunit PAN3. | PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] | 0.999 |
| VDBG_01956 | VDBG_00606 | C9SBW3 | C9S6K7 | PAB-dependent poly(A)-specific ribonuclease subunit PAN3. | RNA exonuclease. | 0.788 |
| VDBG_01956 | VDBG_00650 | C9SBW3 | C9S6Q1 | PAB-dependent poly(A)-specific ribonuclease subunit PAN3. | Nuclear envelope protein Cut8; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. | 0.788 |
| VDBG_01956 | VDBG_03158 | C9SBW3 | C9SD84 | PAB-dependent poly(A)-specific ribonuclease subunit PAN3. | Exonuclease domain-containing protein. | 0.788 |
| VDBG_01956 | VDBG_06137 | C9SBW3 | C9SML3 | PAB-dependent poly(A)-specific ribonuclease subunit PAN3. | RNA exonuclease. | 0.788 |
| VDBG_01956 | VDBG_08334 | C9SBW3 | C9STR3 | PAB-dependent poly(A)-specific ribonuclease subunit PAN3. | RNA exonuclease. | 0.788 |
| VDBG_02887 | VDBG_08334 | C9SCG3 | C9STR3 | Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c. | RNA exonuclease. | 0.604 |
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