5 items (Verticillium alfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00763	Heat shock protein Hsp88. (608 aa)
	VDBG_00205	Psi1. (370 aa)
	VDBG_03874	Heat shock protein SSB1. (485 aa)
	VDBG_05260	Hsp70-like protein; Belongs to the heat shock protein 70 family. (651 aa)
	VDBG_09948	Heat shock protein STI1. (584 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00205	VDBG_00763	C9S950	C9S770	Psi1.	Heat shock protein Hsp88.	0.975
VDBG_00205	VDBG_03874	C9S950	C9SEX9	Psi1.	Heat shock protein SSB1.	0.911
VDBG_00205	VDBG_05260	C9S950	C9SKD3	Psi1.	Hsp70-like protein; Belongs to the heat shock protein 70 family.	0.921
VDBG_00205	VDBG_09948	C9S950	C9SYH3	Psi1.	Heat shock protein STI1.	0.954
VDBG_00763	VDBG_00205	C9S770	C9S950	Heat shock protein Hsp88.	Psi1.	0.975
VDBG_00763	VDBG_03874	C9S770	C9SEX9	Heat shock protein Hsp88.	Heat shock protein SSB1.	0.795
VDBG_00763	VDBG_05260	C9S770	C9SKD3	Heat shock protein Hsp88.	Hsp70-like protein; Belongs to the heat shock protein 70 family.	0.797
VDBG_00763	VDBG_09948	C9S770	C9SYH3	Heat shock protein Hsp88.	Heat shock protein STI1.	0.986
VDBG_03874	VDBG_00205	C9SEX9	C9S950	Heat shock protein SSB1.	Psi1.	0.911
VDBG_03874	VDBG_00763	C9SEX9	C9S770	Heat shock protein SSB1.	Heat shock protein Hsp88.	0.795
VDBG_03874	VDBG_05260	C9SEX9	C9SKD3	Heat shock protein SSB1.	Hsp70-like protein; Belongs to the heat shock protein 70 family.	0.921
VDBG_03874	VDBG_09948	C9SEX9	C9SYH3	Heat shock protein SSB1.	Heat shock protein STI1.	0.877
VDBG_05260	VDBG_00205	C9SKD3	C9S950	Hsp70-like protein; Belongs to the heat shock protein 70 family.	Psi1.	0.921
VDBG_05260	VDBG_00763	C9SKD3	C9S770	Hsp70-like protein; Belongs to the heat shock protein 70 family.	Heat shock protein Hsp88.	0.797
VDBG_05260	VDBG_03874	C9SKD3	C9SEX9	Hsp70-like protein; Belongs to the heat shock protein 70 family.	Heat shock protein SSB1.	0.921
VDBG_05260	VDBG_09948	C9SKD3	C9SYH3	Hsp70-like protein; Belongs to the heat shock protein 70 family.	Heat shock protein STI1.	0.884
VDBG_09948	VDBG_00205	C9SYH3	C9S950	Heat shock protein STI1.	Psi1.	0.954
VDBG_09948	VDBG_00763	C9SYH3	C9S770	Heat shock protein STI1.	Heat shock protein Hsp88.	0.986
VDBG_09948	VDBG_03874	C9SYH3	C9SEX9	Heat shock protein STI1.	Heat shock protein SSB1.	0.877
VDBG_09948	VDBG_05260	C9SYH3	C9SKD3	Heat shock protein STI1.	Hsp70-like protein; Belongs to the heat shock protein 70 family.	0.884