(17 nodes) Gene silencing by RNA, and Small interfering RNA (siRNA) biogenesis network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00631	Translin. (256 aa)
	VDBG_00862	RNase3 domain-containing protein; Belongs to the helicase family. Dicer subfamily. (1510 aa)
	VDBG_02161	Staphylococcal nuclease domain-containing protein. (842 aa)
	VDBG_01721	Predicted protein. (836 aa)
	VDBG_02071	RNA-dependent RNA polymerase. (1465 aa)
	VDBG_03564	Argonaute. (960 aa)
	VDBG_05221	Ribonuclease. (426 aa)
	VDBG_05294	Uncharacterized protein. (1240 aa)
	VDBG_05298	Uncharacterized protein. (459 aa)
	VDBG_05690	Predicted protein. (372 aa)
	VDBG_05691	RNA-dependent RNA polymerase. (99 aa)
	VDBG_05692	RNA-dependent RNA polymerase. (139 aa)
	VDBG_06087	RNA-dependent RNA polymerase. (1283 aa)
	VDBG_07297	Translin associated factor X. (256 aa)
	VDBG_07781	Predicted protein. (153 aa)
	VDBG_08034	Eukaryotic translation initiation factor 2C 3. (928 aa)
	VDBG_09049	CbbX. (2003 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00631	VDBG_03564	C9S6N2	C9SGB5	Translin.	Argonaute.	0.669
VDBG_00631	VDBG_07297	C9S6N2	C9SQR2	Translin.	Translin associated factor X.	0.999
VDBG_00631	VDBG_07781	C9S6N2	C9SSA6	Translin.	Predicted protein.	0.669
VDBG_00631	VDBG_08034	C9S6N2	C9ST09	Translin.	Eukaryotic translation initiation factor 2C 3.	0.669
VDBG_00862	VDBG_03564	C9S7J2	C9SGB5	RNase3 domain-containing protein; Belongs to the helicase family. Dicer subfamily.	Argonaute.	0.765
VDBG_00862	VDBG_07781	C9S7J2	C9SSA6	RNase3 domain-containing protein; Belongs to the helicase family. Dicer subfamily.	Predicted protein.	0.765
VDBG_00862	VDBG_08034	C9S7J2	C9ST09	RNase3 domain-containing protein; Belongs to the helicase family. Dicer subfamily.	Eukaryotic translation initiation factor 2C 3.	0.810
VDBG_02161	VDBG_05221	C9S9I9	C9SK94	Staphylococcal nuclease domain-containing protein.	Ribonuclease.	0.551
VDBG_02161	VDBG_07297	C9S9I9	C9SQR2	Staphylococcal nuclease domain-containing protein.	Translin associated factor X.	0.483
VDBG_03564	VDBG_00631	C9SGB5	C9S6N2	Argonaute.	Translin.	0.669
VDBG_03564	VDBG_00862	C9SGB5	C9S7J2	Argonaute.	RNase3 domain-containing protein; Belongs to the helicase family. Dicer subfamily.	0.765
VDBG_03564	VDBG_05221	C9SGB5	C9SK94	Argonaute.	Ribonuclease.	0.641
VDBG_03564	VDBG_05294	C9SGB5	C9SKG7	Argonaute.	Uncharacterized protein.	0.757
VDBG_03564	VDBG_05298	C9SGB5	C9SKH1	Argonaute.	Uncharacterized protein.	0.689
VDBG_03564	VDBG_07297	C9SGB5	C9SQR2	Argonaute.	Translin associated factor X.	0.665
VDBG_03564	VDBG_09049	C9SGB5	C9SVX4	Argonaute.	CbbX.	0.414
VDBG_05221	VDBG_02161	C9SK94	C9S9I9	Ribonuclease.	Staphylococcal nuclease domain-containing protein.	0.551
VDBG_05221	VDBG_03564	C9SK94	C9SGB5	Ribonuclease.	Argonaute.	0.641
VDBG_05221	VDBG_07781	C9SK94	C9SSA6	Ribonuclease.	Predicted protein.	0.641
VDBG_05221	VDBG_08034	C9SK94	C9ST09	Ribonuclease.	Eukaryotic translation initiation factor 2C 3.	0.641