STRINGSTRING
VDBG_00631 VDBG_00631 VDBG_00862 VDBG_00862 VDBG_02161 VDBG_02161 VDBG_03564 VDBG_03564 VDBG_05221 VDBG_05221 VDBG_05294 VDBG_05294 VDBG_05298 VDBG_05298 VDBG_06087 VDBG_06087 VDBG_07297 VDBG_07297 VDBG_07781 VDBG_07781 VDBG_08034 VDBG_08034
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_00631Translin. (256 aa)
VDBG_00862RNase3 domain-containing protein; Belongs to the helicase family. Dicer subfamily. (1510 aa)
VDBG_02161Staphylococcal nuclease domain-containing protein. (842 aa)
VDBG_03564Argonaute. (960 aa)
VDBG_05221Ribonuclease. (426 aa)
VDBG_05294Uncharacterized protein. (1240 aa)
VDBG_05298Uncharacterized protein. (459 aa)
VDBG_06087RNA-dependent RNA polymerase. (1283 aa)
VDBG_07297Translin associated factor X. (256 aa)
VDBG_07781Predicted protein. (153 aa)
VDBG_08034Eukaryotic translation initiation factor 2C 3. (928 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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