(5 nodes) Est1/Ebs1-like, and Double-stranded DNA helicase activity network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00662	ATP-dependent helicase NAM7. (1041 aa)
	VDBG_00765	Nonsense-mediated mRNA decay protein. (739 aa)
	VDBG_01811	EST1_DNA_bind domain-containing protein. (734 aa)
	VDBG_06882	Uncharacterized protein. (881 aa)
	VDBG_09872	AAA_12 domain-containing protein. (968 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00662	VDBG_00765	C9S6R3	C9S772	ATP-dependent helicase NAM7.	Nonsense-mediated mRNA decay protein.	0.962
VDBG_00662	VDBG_01811	C9S6R3	C9SBG8	ATP-dependent helicase NAM7.	EST1_DNA_bind domain-containing protein.	0.858
VDBG_00662	VDBG_06882	C9S6R3	C9SPQ7	ATP-dependent helicase NAM7.	Uncharacterized protein.	0.793
VDBG_00765	VDBG_00662	C9S772	C9S6R3	Nonsense-mediated mRNA decay protein.	ATP-dependent helicase NAM7.	0.962
VDBG_00765	VDBG_01811	C9S772	C9SBG8	Nonsense-mediated mRNA decay protein.	EST1_DNA_bind domain-containing protein.	0.738
VDBG_00765	VDBG_06882	C9S772	C9SPQ7	Nonsense-mediated mRNA decay protein.	Uncharacterized protein.	0.661
VDBG_00765	VDBG_09872	C9S772	C9SY97	Nonsense-mediated mRNA decay protein.	AAA_12 domain-containing protein.	0.962
VDBG_01811	VDBG_00662	C9SBG8	C9S6R3	EST1_DNA_bind domain-containing protein.	ATP-dependent helicase NAM7.	0.858
VDBG_01811	VDBG_00765	C9SBG8	C9S772	EST1_DNA_bind domain-containing protein.	Nonsense-mediated mRNA decay protein.	0.738
VDBG_01811	VDBG_06882	C9SBG8	C9SPQ7	EST1_DNA_bind domain-containing protein.	Uncharacterized protein.	0.617
VDBG_01811	VDBG_09872	C9SBG8	C9SY97	EST1_DNA_bind domain-containing protein.	AAA_12 domain-containing protein.	0.858
VDBG_06882	VDBG_00662	C9SPQ7	C9S6R3	Uncharacterized protein.	ATP-dependent helicase NAM7.	0.793
VDBG_06882	VDBG_00765	C9SPQ7	C9S772	Uncharacterized protein.	Nonsense-mediated mRNA decay protein.	0.661
VDBG_06882	VDBG_01811	C9SPQ7	C9SBG8	Uncharacterized protein.	EST1_DNA_bind domain-containing protein.	0.617
VDBG_06882	VDBG_09872	C9SPQ7	C9SY97	Uncharacterized protein.	AAA_12 domain-containing protein.	0.793
VDBG_09872	VDBG_00765	C9SY97	C9S772	AAA_12 domain-containing protein.	Nonsense-mediated mRNA decay protein.	0.962
VDBG_09872	VDBG_01811	C9SY97	C9SBG8	AAA_12 domain-containing protein.	EST1_DNA_bind domain-containing protein.	0.858
VDBG_09872	VDBG_06882	C9SY97	C9SPQ7	AAA_12 domain-containing protein.	Uncharacterized protein.	0.793