STRINGSTRING
VDBG_00239 VDBG_00239 VDBG_00240 VDBG_00240 VDBG_00330 VDBG_00330 VDBG_00795 VDBG_00795 VDBG_00052 VDBG_00052 VDBG_01074 VDBG_01074 VDBG_01491 VDBG_01491 VDBG_01521 VDBG_01521 VDBG_01969 VDBG_01969 VDBG_03087 VDBG_03087 VDBG_03346 VDBG_03346 VDBG_03362 VDBG_03362 VDBG_03403 VDBG_03403 VDBG_04084 VDBG_04084 VDBG_03486 VDBG_03486 FEN1 FEN1 VDBG_04264 VDBG_04264 VDBG_04551 VDBG_04551 VDBG_04645 VDBG_04645 MCM7 MCM7 VDBG_04775 VDBG_04775 VDBG_04776 VDBG_04776 VDBG_04858 VDBG_04858 VDBG_04326 VDBG_04326 VDBG_04435 VDBG_04435 VDBG_05084 VDBG_05084 VDBG_05285 VDBG_05285 VDBG_05409 VDBG_05409 VDBG_05546 VDBG_05546 VDBG_07009 VDBG_07009 VDBG_07007 VDBG_07007 VDBG_07512 VDBG_07512 VDBG_07617 VDBG_07617 VDBG_07728 VDBG_07728 VDBG_08150 VDBG_08150 VDBG_08168 VDBG_08168 VDBG_08271 VDBG_08271 VDBG_08337 VDBG_08337 VDBG_08505 VDBG_08505 VDBG_09397 VDBG_09397 VDBG_09813 VDBG_09813
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_00239DNA replication licensing factor mcm5; Belongs to the MCM family. (638 aa)
VDBG_00240Predicted protein. (49 aa)
VDBG_00330DNA polymerase epsilon subunit B. (811 aa)
VDBG_00795Cell division control protein. (845 aa)
VDBG_00052DNA polymerase. (1055 aa)
VDBG_01074Origin recognition complex subunit 4. (869 aa)
VDBG_01491Uncharacterized protein. (833 aa)
VDBG_01521Uncharacterized protein. (216 aa)
VDBG_01969DNA polymerase IV. (631 aa)
VDBG_03087DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2076 aa)
VDBG_03346DNA primase; Belongs to the eukaryotic-type primase small subunit family. (495 aa)
VDBG_03362DNA polymerase subunit delta-2. (497 aa)
VDBG_03403AAA_16 domain-containing protein. (172 aa)
VDBG_04084Origin recognition complex subunit 2. (555 aa)
VDBG_03486Uncharacterized protein. (123 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (308 aa)
VDBG_04264DNA replication licensing factor mcm2; Belongs to the MCM family. (699 aa)
VDBG_04551DNA helicase; Belongs to the MCM family. (1010 aa)
VDBG_04645Origin recognition complex subunit. (726 aa)
MCM7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (838 aa)
VDBG_04775Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (239 aa)
VDBG_04776Vezatin domain-containing protein. (505 aa)
VDBG_04858Cell division control protein; Belongs to the CDC6/cdc18 family. (605 aa)
VDBG_04326DNA helicase; Belongs to the MCM family. (869 aa)
VDBG_04435Predicted protein. (285 aa)
VDBG_05084Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (679 aa)
VDBG_05285Serine/threonine-protein kinase MAK. (779 aa)
VDBG_05409Replication factor C subunit 1. (342 aa)
VDBG_05546Minichromosome loss protein. (835 aa)
VDBG_07009DNA polymerase. (1231 aa)
VDBG_07007Uncharacterized protein. (309 aa)
VDBG_07512DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (593 aa)
VDBG_07617Protein kinase domain-containing protein. (573 aa)
VDBG_07728AAA domain-containing protein. (1150 aa)
VDBG_08150DNA replication licensing factor mcm10. (775 aa)
VDBG_08168DBF zinc finger domain-containing protein. (508 aa)
VDBG_08271Chromosome transmission fidelity protein. (945 aa)
VDBG_08337DNA helicase; Belongs to the MCM family. (751 aa)
VDBG_08505Uncharacterized protein. (286 aa)
VDBG_09397DNA primase large subunit. (413 aa)
VDBG_09813Cell division control protein. (473 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
Server load: low (16%) [HD]