STRINGSTRING
VDBG_00596 VDBG_00596 VDBG_00611 VDBG_00611 VDBG_00612 VDBG_00612 VDBG_00887 VDBG_00887 VDBG_00992 VDBG_00992 VDBG_01987 VDBG_01987 VDBG_02956 VDBG_02956 VDBG_03075 VDBG_03075 VDBG_03380 VDBG_03380 VDBG_04134 VDBG_04134 VDBG_03539 VDBG_03539 VDBG_03714 VDBG_03714 VDBG_04724 VDBG_04724 VDBG_04938 VDBG_04938 VDBG_04447 VDBG_04447 VDBG_05893 VDBG_05893 VDBG_06667 VDBG_06667 VDBG_07391 VDBG_07391 VDBG_07996 VDBG_07996 VDBG_08268 VDBG_08268 VDBG_08637 VDBG_08637 VDBG_08697 VDBG_08697 VDBG_08864 VDBG_08864 VDBG_09335 VDBG_09335 VDBG_10096 VDBG_10096
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_00596DNA base excision repair N-glycosylase. (317 aa)
VDBG_00611DNA-3-methyladenine glycosylase. (107 aa)
VDBG_00612Uncharacterized protein. (185 aa)
VDBG_00887Tyrosyl-DNA phosphodiesterase. (527 aa)
VDBG_00992DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1688 aa)
VDBG_01987DNA-(Apurinic or apyrimidinic site) lyase. (334 aa)
VDBG_02956Bifunctional polynucleotide phosphatase/kinase. (477 aa)
VDBG_03075DNA ligase. (708 aa)
VDBG_03380Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs. (424 aa)
VDBG_04134ATP-dependent DNA ligase domain-containing protein. (556 aa)
VDBG_03539Uncharacterized protein. (644 aa)
VDBG_03714Uracil-DNA glycosylase. (246 aa)
VDBG_04724N-glycosylase/DNA lyase. (412 aa)
VDBG_04938DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (891 aa)
VDBG_04447DNA polymerase lambda. (770 aa)
VDBG_05893DNA-(Apurinic or apyrimidinic site) lyase. (370 aa)
VDBG_06667DNA ligase. (944 aa)
VDBG_07391G/U mismatch-specific uracil DNA glycosylase. (320 aa)
VDBG_07996Formamidopyrimidine-DNA glycosylase. (390 aa)
VDBG_08268Ku70. (645 aa)
VDBG_08637Tyrosyl-DNA phosphodiesterase domain-containing protein. (586 aa)
VDBG_08697DNA ligase. (893 aa)
VDBG_08864ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase. (722 aa)
VDBG_09335DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (262 aa)
VDBG_10096Artemis protein. (657 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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