(12 nodes) Proteasome subunit network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00502	Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (254 aa)
	VDBG_00101	Proteasome subunit alpha type. (269 aa)
	VDBG_02450	Proteasome component PRE3. (364 aa)
	VDBG_02830	Proteasome endopeptidase complex. (283 aa)
	VDBG_04152	Proteasome subunit beta. (182 aa)
	VDBG_04714	Proteasome component PUP1. (99 aa)
	VDBG_04731	Proteasome subunit beta; Belongs to the peptidase T1B family. (276 aa)
	VDBG_04790	Proteasome subunit beta. (286 aa)
	VDBG_05025	Proteasome endopeptidase complex. (313 aa)
	VDBG_04387	Proteasome subunit alpha type. (243 aa)
	VDBG_05293	Proteasome endopeptidase complex. (263 aa)
	VDBG_05971	Proteasome component PUP3. (191 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00101	VDBG_00502	C9S8N3	C9S656	Proteasome subunit alpha type.	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	0.999
VDBG_00101	VDBG_02450	C9S8N3	C9SAQ2	Proteasome subunit alpha type.	Proteasome component PRE3.	0.999
VDBG_00101	VDBG_02830	C9S8N3	C9SCA6	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.999
VDBG_00101	VDBG_04152	C9S8N3	C9SFU8	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
VDBG_00101	VDBG_04387	C9S8N3	C9SJB6	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
VDBG_00101	VDBG_04714	C9S8N3	C9SI32	Proteasome subunit alpha type.	Proteasome component PUP1.	0.999
VDBG_00101	VDBG_04731	C9S8N3	C9SI49	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
VDBG_00101	VDBG_04790	C9S8N3	C9SIA8	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
VDBG_00101	VDBG_05025	C9S8N3	C9SIZ3	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.999
VDBG_00101	VDBG_05293	C9S8N3	C9SKG6	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.999
VDBG_00101	VDBG_05971	C9S8N3	C9SM47	Proteasome subunit alpha type.	Proteasome component PUP3.	0.999
VDBG_00502	VDBG_00101	C9S656	C9S8N3	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Proteasome subunit alpha type.	0.999
VDBG_00502	VDBG_02450	C9S656	C9SAQ2	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Proteasome component PRE3.	0.999
VDBG_00502	VDBG_02830	C9S656	C9SCA6	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Proteasome endopeptidase complex.	0.999
VDBG_00502	VDBG_04152	C9S656	C9SFU8	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Proteasome subunit beta.	0.999
VDBG_00502	VDBG_04387	C9S656	C9SJB6	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Proteasome subunit alpha type.	0.999
VDBG_00502	VDBG_04714	C9S656	C9SI32	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Proteasome component PUP1.	0.999
VDBG_00502	VDBG_04731	C9S656	C9SI49	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
VDBG_00502	VDBG_04790	C9S656	C9SIA8	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Proteasome subunit beta.	0.999
VDBG_00502	VDBG_05025	C9S656	C9SIZ3	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Proteasome endopeptidase complex.	0.999