STRINGSTRING
VDBG_01138 VDBG_01138 VDBG_00803 VDBG_00803 VDBG_02141 VDBG_02141 VDBG_01878 VDBG_01878 VDBG_03861 VDBG_03861 VDBG_04122 VDBG_04122 VDBG_03590 VDBG_03590 VDBG_03692 VDBG_03692 VDBG_05789 VDBG_05789 VDBG_05379 VDBG_05379 VDBG_05446 VDBG_05446 VDBG_05477 VDBG_05477 VDBG_07235 VDBG_07235 VDBG_06981 VDBG_06981 VDBG_07440 VDBG_07440
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_01138Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (527 aa)
VDBG_00803Spt3. (304 aa)
VDBG_02141SGF29 C-terminal domain-containing protein. (355 aa)
VDBG_01878Transcription factor SPT8. (571 aa)
VDBG_03861Histone acetyltransferase GCN5. (358 aa)
VDBG_04122Transcription-associated protein; Belongs to the PI3/PI4-kinase family. (3746 aa)
VDBG_03590Bromodomain-containing protein. (1041 aa)
VDBG_03692Transcriptional adapter 3. (713 aa)
VDBG_05789Uncharacterized protein. (959 aa)
VDBG_05379Predicted protein. (235 aa)
VDBG_05446Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (224 aa)
VDBG_05477Predicted protein. (295 aa)
VDBG_07235Uncharacterized protein. (181 aa)
VDBG_06981SCA7 domain-containing protein. (417 aa)
VDBG_07440Ubiquitinyl hydrolase 1. (519 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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