(14 nodes) Cytosolic large ribosomal subunit network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00570	60S ribosomal protein L22. (126 aa)
	VDBG_02053	60S ribosomal protein L14-B. (147 aa)
	VDBG_03007	60S ribosomal protein L27-B. (135 aa)
	VDBG_04277	60S ribosomal protein L5. (299 aa)
	VDBG_04817	60S ribosomal protein L35. (125 aa)
	VDBG_05021	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (172 aa)
	VDBG_05257	40S ribosomal protein S6. (142 aa)
	VDBG_05969	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (106 aa)
	VDBG_06906	60S ribosomal protein L7. (262 aa)
	VDBG_08653	60S ribosomal protein L28. (158 aa)
	VDBG_09054	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family. (202 aa)
	VDBG_09313	60S ribosomal protein L8. (261 aa)
	VDBG_09323	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	VDBG_09814	60S ribosomal protein L28; Belongs to the universal ribosomal protein uL15 family. (149 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00570	VDBG_02053	C9S6F0	C9SC60	60S ribosomal protein L22.	60S ribosomal protein L14-B.	0.999
VDBG_00570	VDBG_03007	C9S6F0	C9SCT3	60S ribosomal protein L22.	60S ribosomal protein L27-B.	0.999
VDBG_00570	VDBG_04277	C9S6F0	C9SGS4	60S ribosomal protein L22.	60S ribosomal protein L5.	0.999
VDBG_00570	VDBG_04817	C9S6F0	C9SID5	60S ribosomal protein L22.	60S ribosomal protein L35.	0.999
VDBG_00570	VDBG_05021	C9S6F0	C9SIY9	60S ribosomal protein L22.	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.999
VDBG_00570	VDBG_05257	C9S6F0	C9SKD0	60S ribosomal protein L22.	40S ribosomal protein S6.	0.999
VDBG_00570	VDBG_05969	C9S6F0	C9SM45	60S ribosomal protein L22.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
VDBG_00570	VDBG_06906	C9S6F0	C9SPT1	60S ribosomal protein L22.	60S ribosomal protein L7.	0.999
VDBG_00570	VDBG_08653	C9S6F0	C9SUS8	60S ribosomal protein L22.	60S ribosomal protein L28.	0.999
VDBG_00570	VDBG_09054	C9S6F0	C9SVX9	60S ribosomal protein L22.	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	0.999
VDBG_00570	VDBG_09313	C9S6F0	C9SWN8	60S ribosomal protein L22.	60S ribosomal protein L8.	0.999
VDBG_00570	VDBG_09323	C9S6F0	C9SX23	60S ribosomal protein L22.	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	0.999
VDBG_00570	VDBG_09814	C9S6F0	C9SY39	60S ribosomal protein L22.	60S ribosomal protein L28; Belongs to the universal ribosomal protein uL15 family.	0.999
VDBG_02053	VDBG_00570	C9SC60	C9S6F0	60S ribosomal protein L14-B.	60S ribosomal protein L22.	0.999
VDBG_02053	VDBG_03007	C9SC60	C9SCT3	60S ribosomal protein L14-B.	60S ribosomal protein L27-B.	0.999
VDBG_02053	VDBG_04277	C9SC60	C9SGS4	60S ribosomal protein L14-B.	60S ribosomal protein L5.	0.999
VDBG_02053	VDBG_04817	C9SC60	C9SID5	60S ribosomal protein L14-B.	60S ribosomal protein L35.	0.999
VDBG_02053	VDBG_05021	C9SC60	C9SIY9	60S ribosomal protein L14-B.	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.999
VDBG_02053	VDBG_05257	C9SC60	C9SKD0	60S ribosomal protein L14-B.	40S ribosomal protein S6.	0.999
VDBG_02053	VDBG_05969	C9SC60	C9SM45	60S ribosomal protein L14-B.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999