28 items (Verticillium alfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00251	Mitochondrial import inner membrane translocase subunit tim-22. (176 aa)
	VDBG_00294	Uncharacterized protein. (306 aa)
	VDBG_00658	Outer mitochondrial membrane protein porin. (247 aa)
	VDBG_00665	Mitochondrial proteins import receptor. (622 aa)
	VDBG_00829	Heat shock protein SSC1; Belongs to the heat shock protein 70 family. (651 aa)
	VDBG_00925	Mitochondrial import receptor subunit tom-20. (178 aa)
	VDBG_00976	Import inner membrane translocase subunit tim-21, mitochondrial. (232 aa)
	VDBG_00153	Mitochondrial import receptor subunit tom-40. (352 aa)
	VDBG_00168	Predicted protein. (53 aa)
	VDBG_02230	Uncharacterized protein. (115 aa)
	VDBG_03349	NADH-ubiquinone oxidoreductase 21.3 kDa subunit. (194 aa)
	VDBG_04412	Chaperone protein dnaJ. (549 aa)
	VDBG_05412	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family. (247 aa)
	VDBG_06304	Mitochondrial inner membrane translocase subunit TIM44. (544 aa)
	VDBG_06365	Mitochondrial import inner membrane translocase subunit tim-54. (496 aa)
	VDBG_06679	Mitochondrial import inner membrane translocase subunit tim-9. (88 aa)
	VDBG_07215	Mitochondrial import inner membrane translocase subunit TIM10. (93 aa)
	VDBG_07760	Uncharacterized protein. (206 aa)
	VDBG_07831	Transmembrane GTPase fzo1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (911 aa)
	VDBG_07979	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family. (627 aa)
	VDBG_08598	Mitochondrial intermembrane space import and assembly protein 40-B. (332 aa)
	VDBG_08643	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family. (94 aa)
	VDBG_08814	Mitochondrial import inner membrane translocase subunit TIM13; Belongs to the small Tim family. (87 aa)
	VDBG_08866	Mitochondrial import inner membrane translocase subunit tim-14. (106 aa)
	VDBG_09615	Mitochondrial outer membrane beta-barrel protein Tob55. (387 aa)
	VDBG_09705	Sulfhydryl oxidase. (202 aa)
	VDBG_09930	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. (284 aa)
	VDBG_10015	Mitochondrial import inner membrane translocase subunit tim-17. (155 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00153	VDBG_00168	C9S8W9	C9S913	Mitochondrial import receptor subunit tom-40.	Predicted protein.	0.996
VDBG_00153	VDBG_00251	C9S8W9	C9S544	Mitochondrial import receptor subunit tom-40.	Mitochondrial import inner membrane translocase subunit tim-22.	0.615
VDBG_00153	VDBG_00294	C9S8W9	C9S587	Mitochondrial import receptor subunit tom-40.	Uncharacterized protein.	0.970
VDBG_00153	VDBG_00658	C9S8W9	C9S6Q9	Mitochondrial import receptor subunit tom-40.	Outer mitochondrial membrane protein porin.	0.955
VDBG_00153	VDBG_00665	C9S8W9	C9S6U6	Mitochondrial import receptor subunit tom-40.	Mitochondrial proteins import receptor.	0.984
VDBG_00153	VDBG_00829	C9S8W9	C9S7F9	Mitochondrial import receptor subunit tom-40.	Heat shock protein SSC1; Belongs to the heat shock protein 70 family.	0.624
VDBG_00153	VDBG_00925	C9S8W9	C9S7T1	Mitochondrial import receptor subunit tom-40.	Mitochondrial import receptor subunit tom-20.	0.993
VDBG_00153	VDBG_00976	C9S8W9	C9S7Y2	Mitochondrial import receptor subunit tom-40.	Import inner membrane translocase subunit tim-21, mitochondrial.	0.678
VDBG_00153	VDBG_03349	C9S8W9	C9SDZ3	Mitochondrial import receptor subunit tom-40.	NADH-ubiquinone oxidoreductase 21.3 kDa subunit.	0.615
VDBG_00153	VDBG_05412	C9S8W9	C9SKT5	Mitochondrial import receptor subunit tom-40.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.639
VDBG_00153	VDBG_06304	C9S8W9	C9SN29	Mitochondrial import receptor subunit tom-40.	Mitochondrial inner membrane translocase subunit TIM44.	0.747
VDBG_00153	VDBG_06365	C9S8W9	C9SN90	Mitochondrial import receptor subunit tom-40.	Mitochondrial import inner membrane translocase subunit tim-54.	0.536
VDBG_00153	VDBG_06679	C9S8W9	C9SP54	Mitochondrial import receptor subunit tom-40.	Mitochondrial import inner membrane translocase subunit tim-9.	0.711
VDBG_00153	VDBG_07215	C9S8W9	C9SQI0	Mitochondrial import receptor subunit tom-40.	Mitochondrial import inner membrane translocase subunit TIM10.	0.790
VDBG_00153	VDBG_07760	C9S8W9	C9SS85	Mitochondrial import receptor subunit tom-40.	Uncharacterized protein.	0.999
VDBG_00153	VDBG_07831	C9S8W9	C9SSF6	Mitochondrial import receptor subunit tom-40.	Transmembrane GTPase fzo1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.520
VDBG_00153	VDBG_07979	C9S8W9	C9SSV4	Mitochondrial import receptor subunit tom-40.	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	0.564
VDBG_00153	VDBG_08598	C9S8W9	C9SUH7	Mitochondrial import receptor subunit tom-40.	Mitochondrial intermembrane space import and assembly protein 40-B.	0.663
VDBG_00153	VDBG_08643	C9S8W9	C9SUR8	Mitochondrial import receptor subunit tom-40.	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	0.702
VDBG_00153	VDBG_08814	C9S8W9	C9SV89	Mitochondrial import receptor subunit tom-40.	Mitochondrial import inner membrane translocase subunit TIM13; Belongs to the small Tim family.	0.791