(12 nodes) Mixed, incl. Formation of Senescence-Associated Heterochromatin Foci (SAHF), and DNA replication-dependent chromatin assembly network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_01509	HIT-type domain-containing protein. (457 aa)
	VDBG_02849	Histone chaperone Rttp106-like protein. (433 aa)
	VDBG_03541	Histone chaperone; Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly. (291 aa)
	VDBG_03543	Histone chaperone asf1. (127 aa)
	VDBG_04242	NapB; Belongs to the nucleosome assembly protein (NAP) family. (294 aa)
	VDBG_03797	Chromatin assembly factor 1 subunit B. (693 aa)
	VDBG_06442	Histone acetyltransferase. (543 aa)
	VDBG_06565	Uncharacterized protein. (628 aa)
	VDBG_07152	HIT-type domain-containing protein. (285 aa)
	VDBG_07851	Protein HIR; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family. (1054 aa)
	VDBG_08820	Uncharacterized protein. (376 aa)
	VDBG_09756	Uncharacterized protein. (518 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_01509	VDBG_02849	C9SAC3	C9SCC5	HIT-type domain-containing protein.	Histone chaperone Rttp106-like protein.	0.863
VDBG_01509	VDBG_07152	C9SAC3	C9SQB7	HIT-type domain-containing protein.	HIT-type domain-containing protein.	0.631
VDBG_02849	VDBG_01509	C9SCC5	C9SAC3	Histone chaperone Rttp106-like protein.	HIT-type domain-containing protein.	0.863
VDBG_02849	VDBG_03541	C9SCC5	C9SG28	Histone chaperone Rttp106-like protein.	Histone chaperone; Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly.	0.577
VDBG_02849	VDBG_03543	C9SCC5	C9SG30	Histone chaperone Rttp106-like protein.	Histone chaperone asf1.	0.577
VDBG_02849	VDBG_03797	C9SCC5	C9SH94	Histone chaperone Rttp106-like protein.	Chromatin assembly factor 1 subunit B.	0.821
VDBG_02849	VDBG_04242	C9SCC5	C9SGI3	Histone chaperone Rttp106-like protein.	NapB; Belongs to the nucleosome assembly protein (NAP) family.	0.499
VDBG_02849	VDBG_06442	C9SCC5	C9SNG7	Histone chaperone Rttp106-like protein.	Histone acetyltransferase.	0.612
VDBG_02849	VDBG_06565	C9SCC5	C9SNU0	Histone chaperone Rttp106-like protein.	Uncharacterized protein.	0.792
VDBG_02849	VDBG_07851	C9SCC5	C9SSH6	Histone chaperone Rttp106-like protein.	Protein HIR; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.494
VDBG_03541	VDBG_02849	C9SG28	C9SCC5	Histone chaperone; Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly.	Histone chaperone Rttp106-like protein.	0.577
VDBG_03541	VDBG_03797	C9SG28	C9SH94	Histone chaperone; Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly.	Chromatin assembly factor 1 subunit B.	0.920
VDBG_03541	VDBG_04242	C9SG28	C9SGI3	Histone chaperone; Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly.	NapB; Belongs to the nucleosome assembly protein (NAP) family.	0.663
VDBG_03541	VDBG_06442	C9SG28	C9SNG7	Histone chaperone; Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly.	Histone acetyltransferase.	0.914
VDBG_03541	VDBG_06565	C9SG28	C9SNU0	Histone chaperone; Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly.	Uncharacterized protein.	0.746
VDBG_03541	VDBG_07851	C9SG28	C9SSH6	Histone chaperone; Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly.	Protein HIR; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.964
VDBG_03541	VDBG_08820	C9SG28	C9SV95	Histone chaperone; Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly.	Uncharacterized protein.	0.830
VDBG_03541	VDBG_09756	C9SG28	C9SXY1	Histone chaperone; Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly.	Uncharacterized protein.	0.738
VDBG_03543	VDBG_02849	C9SG30	C9SCC5	Histone chaperone asf1.	Histone chaperone Rttp106-like protein.	0.577
VDBG_03543	VDBG_03797	C9SG30	C9SH94	Histone chaperone asf1.	Chromatin assembly factor 1 subunit B.	0.920