(11 nodes) Mixed, incl. Integrin signaling, and Protein tyrosine phosphatase activity network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00247	Uncharacterized protein. (626 aa)
	VDBG_00276	Predicted protein. (459 aa)
	VDBG_00694	SH3 domain-containing protein. (322 aa)
	VDBG_02505	Fibronectin type III domain-containing protein. (764 aa)
	VDBG_04062	Uncharacterized protein. (771 aa)
	VDBG_03631	Protein tyrosine phosphatase. (548 aa)
	VDBG_05438	Uncharacterized protein. (210 aa)
	VDBG_05439	Guanine nucleotide exchange factor LTE1. (1457 aa)
	VDBG_06301	Uncharacterized protein. (214 aa)
	VDBG_07446	Uncharacterized protein. (519 aa)
	VDBG_08739	Uncharacterized protein. (270 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00247	VDBG_00276	C9S540	C9S569	Uncharacterized protein.	Predicted protein.	0.543
VDBG_00247	VDBG_00694	C9S540	C9S6X5	Uncharacterized protein.	SH3 domain-containing protein.	0.782
VDBG_00247	VDBG_03631	C9S540	C9SGK5	Uncharacterized protein.	Protein tyrosine phosphatase.	0.543
VDBG_00247	VDBG_04062	C9S540	C9SFG7	Uncharacterized protein.	Uncharacterized protein.	0.543
VDBG_00247	VDBG_08739	C9S540	C9SV14	Uncharacterized protein.	Uncharacterized protein.	0.543
VDBG_00276	VDBG_00247	C9S569	C9S540	Predicted protein.	Uncharacterized protein.	0.543
VDBG_00276	VDBG_00694	C9S569	C9S6X5	Predicted protein.	SH3 domain-containing protein.	0.937
VDBG_00276	VDBG_02505	C9S569	C9SBB4	Predicted protein.	Fibronectin type III domain-containing protein.	0.553
VDBG_00276	VDBG_07446	C9S569	C9SRC1	Predicted protein.	Uncharacterized protein.	0.543
VDBG_00694	VDBG_00247	C9S6X5	C9S540	SH3 domain-containing protein.	Uncharacterized protein.	0.782
VDBG_00694	VDBG_00276	C9S6X5	C9S569	SH3 domain-containing protein.	Predicted protein.	0.937
VDBG_00694	VDBG_03631	C9S6X5	C9SGK5	SH3 domain-containing protein.	Protein tyrosine phosphatase.	0.584
VDBG_00694	VDBG_04062	C9S6X5	C9SFG7	SH3 domain-containing protein.	Uncharacterized protein.	0.584
VDBG_00694	VDBG_05438	C9S6X5	C9SKW1	SH3 domain-containing protein.	Uncharacterized protein.	0.901
VDBG_00694	VDBG_05439	C9S6X5	C9SKW2	SH3 domain-containing protein.	Guanine nucleotide exchange factor LTE1.	0.901
VDBG_00694	VDBG_06301	C9S6X5	C9SN26	SH3 domain-containing protein.	Uncharacterized protein.	0.452
VDBG_00694	VDBG_07446	C9S6X5	C9SRC1	SH3 domain-containing protein.	Uncharacterized protein.	0.782
VDBG_00694	VDBG_08739	C9S6X5	C9SV14	SH3 domain-containing protein.	Uncharacterized protein.	0.584
VDBG_02505	VDBG_00276	C9SBB4	C9S569	Fibronectin type III domain-containing protein.	Predicted protein.	0.553
VDBG_02505	VDBG_03631	C9SBB4	C9SGK5	Fibronectin type III domain-containing protein.	Protein tyrosine phosphatase.	0.553