STRINGSTRING
VDBG_00306 VDBG_00306 VDBG_00367 VDBG_00367 VDBG_00397 VDBG_00397 VDBG_01093 VDBG_01093 VDBG_02174 VDBG_02174 VDBG_02648 VDBG_02648 VDBG_04686 VDBG_04686 VDBG_06063 VDBG_06063 VDBG_06700 VDBG_06700 VDBG_08817 VDBG_08817 VDBG_09307 VDBG_09307
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_00306Ras-2. (182 aa)
VDBG_00367cAMP-dependent protein kinase regulatory subunit. (216 aa)
VDBG_00397Uncharacterized protein. (874 aa)
VDBG_01093Ras-1. (170 aa)
VDBG_02174Protein kinase DC2; Belongs to the protein kinase superfamily. (397 aa)
VDBG_026483',5'-cyclic-nucleotide phosphodiesterase. (551 aa)
VDBG_04686Cutinase G-box binding protein. (572 aa)
VDBG_06063Serine/threonine-protein kinase ppk18. (1908 aa)
VDBG_06700Phosphodiesterase. (849 aa)
VDBG_08817cAMP-dependent protein kinase; Belongs to the protein kinase superfamily. (442 aa)
VDBG_09307ApbA domain-containing protein. (117 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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