STRINGSTRING
VDBG_00491 VDBG_00491 VDBG_00840 VDBG_00840 VDBG_02401 VDBG_02401 VDBG_07434 VDBG_07434 VDBG_07685 VDBG_07685
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_00491Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (468 aa)
VDBG_00840Isocitrate dehydrogenase [NAD] subunit, mitochondrial. (382 aa)
VDBG_02401Isocitrate dehydrogenase [NAD] subunit, mitochondrial. (382 aa)
VDBG_07434Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family. (705 aa)
VDBG_07685Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family. (704 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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