STRINGSTRING
VDBG_00648 VDBG_00648 VDBG_00050 VDBG_00050 VDBG_02962 VDBG_02962 VDBG_02755 VDBG_02755 VDBG_02756 VDBG_02756 VDBG_04100 VDBG_04100 VDBG_05024 VDBG_05024 VDBG_05026 VDBG_05026 VDBG_05273 VDBG_05273 VDBG_06748 VDBG_06748 VDBG_07141 VDBG_07141 VDBG_07142 VDBG_07142 VDBG_07143 VDBG_07143 VDBG_07144 VDBG_07144 VDBG_07145 VDBG_07145 VDBG_09160 VDBG_09160 VDBG_09198 VDBG_09198 VDBG_10056 VDBG_10056
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_00648FluG; Belongs to the glutamine synthetase family. (832 aa)
VDBG_00050Glucose-methanol-choline oxidoreductase. (1117 aa)
VDBG_02962FluG; Belongs to the glutamine synthetase family. (395 aa)
VDBG_02755Acetyl-CoA carboxylase. (1763 aa)
VDBG_02756Acetyl-CoA carboxylase. (108 aa)
VDBG_04100NADP-dependent malic enzyme. (203 aa)
VDBG_05024Pyruvate carboxylase. (1073 aa)
VDBG_05026Uncharacterized protein. (307 aa)
VDBG_05273Urea amidolyase. (1794 aa)
VDBG_06748Silencing information regulator. (155 aa)
VDBG_07141Glutamate synthase small chain. (258 aa)
VDBG_07142Glutamate synthase small chain. (163 aa)
VDBG_07143Ferredoxin-dependent glutamate synthase. (500 aa)
VDBG_07144Ferredoxin-dependent glutamate synthase. (292 aa)
VDBG_07145Glutamate synthase. (216 aa)
VDBG_09160Glutaminase. (253 aa)
VDBG_09198Biotin-protein ligase ligase. (676 aa)
VDBG_10056Glutamyl-tRNA(Gln) amidotransferase subunit A. (720 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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