STRINGSTRING
VDBG_00300 VDBG_00300 VDBG_00480 VDBG_00480 VDBG_02296 VDBG_02296 VDBG_06058 VDBG_06058 VDBG_06353 VDBG_06353 VDBG_06354 VDBG_06354 VDBG_06644 VDBG_06644 VDBG_06650 VDBG_06650 VDBG_06822 VDBG_06822 VDBG_08445 VDBG_08445 VDBG_08829 VDBG_08829
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_00300Gamma-glutamyl phosphate reductase. (452 aa)
VDBG_00480Glutamine synthetase; Belongs to the glutamine synthetase family. (315 aa)
VDBG_02296Glutamine synthetase; Belongs to the glutamine synthetase family. (483 aa)
VDBG_06058Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. (428 aa)
VDBG_06353Pyrroline-5-carboxylate reductase. (309 aa)
VDBG_06354Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. (580 aa)
VDBG_06644Glutamyl-tRNA synthetase, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family. (562 aa)
VDBG_06650NAD-specific glutamate dehydrogenase. (456 aa)
VDBG_06822Glutamine synthetase; Belongs to the glutamine synthetase family. (356 aa)
VDBG_08445Pyrroline-5-carboxylate reductase. (244 aa)
VDBG_08829Glutamate 5-kinase. (428 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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