STRINGSTRING
VDBG_00277 VDBG_00277 VDBG_01148 VDBG_01148 VDBG_00876 VDBG_00876 VDBG_00008 VDBG_00008 VDBG_02221 VDBG_02221 VDBG_01891 VDBG_01891 VDBG_01925 VDBG_01925 VDBG_01986 VDBG_01986 VDBG_02061 VDBG_02061 VDBG_03989 VDBG_03989 VDBG_03561 VDBG_03561 VDBG_04594 VDBG_04594 VDBG_04616 VDBG_04616 VDBG_04748 VDBG_04748 VDBG_05733 VDBG_05733 VDBG_05357 VDBG_05357 VDBG_06443 VDBG_06443 VDBG_06666 VDBG_06666 VDBG_07566 VDBG_07566 VDBG_07567 VDBG_07567 VDBG_08341 VDBG_08341 VDBG_09245 VDBG_09245 VDBG_09652 VDBG_09652 VDBG_10210 VDBG_10210
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_00277O-methyltransferase family protein. (250 aa)
VDBG_01148HD domain-containing protein. (260 aa)
VDBG_00876Predicted protein. (101 aa)
VDBG_00008Uracil phosphoribosyltransferase. (148 aa)
VDBG_02221Ser/Thr protein phosphatase family. (610 aa)
VDBG_01891HD domain-containing protein. (238 aa)
VDBG_01925CMP/dCMP-type deaminase domain-containing protein. (405 aa)
VDBG_01986Predicted protein. (142 aa)
VDBG_02061tRNA-specific adenosine deaminase. (362 aa)
VDBG_03989CMP/dCMP-type deaminase domain-containing protein. (429 aa)
VDBG_03561CMP/dCMP deaminase. (222 aa)
VDBG_04594IdgA domain-containing protein. (768 aa)
VDBG_04616Uridine nucleosidase. (388 aa)
VDBG_04748Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (163 aa)
VDBG_05733Uncharacterized protein. (189 aa)
VDBG_05357HMG box domain-containing protein. (672 aa)
VDBG_06443D-mandelate dehydrogenase. (339 aa)
VDBG_06666Uracil phosphoribosyltransferase. (222 aa)
VDBG_07566FCY1p. (239 aa)
VDBG_07567Arabinogalactan endo-beta-1,4-galactanase. (349 aa)
VDBG_08341Uridine kinase. (448 aa)
VDBG_09245Deoxycytidylate deaminase. (147 aa)
VDBG_09652Rhamnogalacturonase B. (470 aa)
VDBG_10210Inosine/uridine-preferring nucleoside hydrolase. (354 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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