STRINGSTRING
VDBG_00876 VDBG_00876 VDBG_00008 VDBG_00008 VDBG_01986 VDBG_01986 VDBG_04594 VDBG_04594 VDBG_04616 VDBG_04616 VDBG_04748 VDBG_04748 VDBG_05733 VDBG_05733 VDBG_05357 VDBG_05357 VDBG_06443 VDBG_06443 VDBG_06666 VDBG_06666 VDBG_08341 VDBG_08341
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_00876Predicted protein. (101 aa)
VDBG_00008Uracil phosphoribosyltransferase. (148 aa)
VDBG_01986Predicted protein. (142 aa)
VDBG_04594IdgA domain-containing protein. (768 aa)
VDBG_04616Uridine nucleosidase. (388 aa)
VDBG_04748Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (163 aa)
VDBG_05733Uncharacterized protein. (189 aa)
VDBG_05357HMG box domain-containing protein. (672 aa)
VDBG_06443D-mandelate dehydrogenase. (339 aa)
VDBG_06666Uracil phosphoribosyltransferase. (222 aa)
VDBG_08341Uridine kinase. (448 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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