STRINGSTRING
VDBG_01918 VDBG_01918 VDBG_01916 VDBG_01916 VDBG_01811 VDBG_01811 VDBG_09932 VDBG_09932 VDBG_09872 VDBG_09872 VDBG_03871 VDBG_03871 VDBG_09512 VDBG_09512 VDBG_06992 VDBG_06992 VDBG_06950 VDBG_06950 VDBG_06740 VDBG_06740 VDBG_06647 VDBG_06647 VDBG_06635 VDBG_06635 VDBG_06302 VDBG_06302 VDBG_05847 VDBG_05847 VDBG_05543 VDBG_05543 VDBG_03680 VDBG_03680 VDBG_03647 VDBG_03647 VDBG_00662 VDBG_00662 VDBG_06994 VDBG_06994 VDBG_00144 VDBG_00144 VDBG_00765 VDBG_00765 VDBG_02195 VDBG_02195 VDBG_04160 VDBG_04160
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_01918NTP_transf_9 domain-containing protein. (165 aa)
VDBG_01916Antiviral helicase SKI2. (1242 aa)
VDBG_01811EST1_DNA_bind domain-containing protein. (734 aa)
VDBG_09932Exosome complex exonuclease RRP41. (155 aa)
VDBG_09872AAA_12 domain-containing protein. (968 aa)
VDBG_03871Eukaryotic translation initiation factor 4E-1; Belongs to the eukaryotic initiation factor 4E family. (255 aa)
VDBG_09512Uncharacterized protein. (276 aa)
VDBG_06992Uncharacterized protein. (286 aa)
VDBG_06950RRM_2 domain-containing protein. (222 aa)
VDBG_06740Exosome complex exonuclease RRP45. (271 aa)
VDBG_06647Uncharacterized protein. (41 aa)
VDBG_06635ATP-dependent RNA helicase DBP2; Belongs to the DEAD box helicase family. (577 aa)
VDBG_06302Uncharacterized protein. (288 aa)
VDBG_05847RNase_PH domain-containing protein. (249 aa)
VDBG_05543Meiotic recombination protein rec14. (310 aa)
VDBG_03680RNase_PH domain-containing protein. (373 aa)
VDBG_03647Superkiller protein. (1415 aa)
VDBG_00662ATP-dependent helicase NAM7. (1041 aa)
VDBG_06994mRNA-decapping enzyme. (169 aa)
VDBG_00144Cap binding protein. (718 aa)
VDBG_00765Nonsense-mediated mRNA decay protein. (739 aa)
VDBG_02195Exosome complex exonuclease RRP43. (340 aa)
VDBG_041605'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1383 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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