(30 nodes) Positive regulation of gene expression network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_06290	Serine/threonine-protein kinase prp4. (815 aa)
	VDBG_01125	S4 RNA-binding domain-containing protein. (470 aa)
	VDBG_01127	Predicted protein. (192 aa)
	VDBG_00590	Cellular nucleic acid-binding protein. (189 aa)
	VDBG_00721	PHD domain-containing protein. (621 aa)
	VDBG_00750	Eukaryotic translation initiation factor 5A. (161 aa)
	VDBG_00833	DUF4210 domain-containing protein. (758 aa)
	VDBG_00140	3'-5' exonuclease domain-containing protein. (586 aa)
	VDBG_00182	Pre-mRNA-splicing factor cwc2. (245 aa)
	VDBG_01805	Woronin body major protein. (131 aa)
	VDBG_01982	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (191 aa)
	VDBG_03597	Sporulation protein RMD1. (411 aa)
	VDBG_03598	DNA methyltransferase Dim-2. (1373 aa)
	VDBG_03684	Tyrosine--tRNA ligase. (561 aa)
	VDBG_04303	Zinc finger protein GIS2. (147 aa)
	VDBG_04304	Zinc finger protein GIS2. (45 aa)
	GUF1	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (620 aa)
	VDBG_04321	Uncharacterized protein. (89 aa)
	VDBG_04852	DNA-directed RNA polymerase II subunit RPB7. (177 aa)
	VDBG_04914	Eukaryotic translation initiation factor 2 subunit gamma. (510 aa)
	VDBG_04945	Uncharacterized protein. (301 aa)
	VDBG_04441	ATP-binding cassette sub-family E member 1. (335 aa)
	VDBG_05130	RPOL4c domain-containing protein. (160 aa)
	VDBG_05347	Epoxide hydrolase. (352 aa)
	VDBG_06093	RRM domain-containing protein. (37 aa)
	VDBG_07365	Uncharacterized protein. (620 aa)
	VDBG_08028	RXT2_N domain-containing protein. (521 aa)
	VDBG_08747	CBP3. (354 aa)
	VDBG_09339	RRM domain-containing protein. (345 aa)
	VDBG_09687	DnaJ and TPR domain-containing protein. (510 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GUF1	VDBG_01125	C9SGZ1	C9S5A8	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	S4 RNA-binding domain-containing protein.	0.613
GUF1	VDBG_01127	C9SGZ1	C9S5B0	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	Predicted protein.	0.613
GUF1	VDBG_01982	C9SGZ1	C9SBY9	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.613
GUF1	VDBG_03684	C9SGZ1	C9SGV3	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	Tyrosine--tRNA ligase.	0.462
GUF1	VDBG_04321	C9SGZ1	C9SGZ2	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	Uncharacterized protein.	0.740
GUF1	VDBG_04914	C9SGZ1	C9SIN2	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	Eukaryotic translation initiation factor 2 subunit gamma.	0.459
VDBG_00182	VDBG_04914	C9S927	C9SIN2	Pre-mRNA-splicing factor cwc2.	Eukaryotic translation initiation factor 2 subunit gamma.	0.406
VDBG_00721	VDBG_08028	C9S702	C9ST03	PHD domain-containing protein.	RXT2_N domain-containing protein.	0.836
VDBG_00750	VDBG_01125	C9S757	C9S5A8	Eukaryotic translation initiation factor 5A.	S4 RNA-binding domain-containing protein.	0.790
VDBG_00750	VDBG_01127	C9S757	C9S5B0	Eukaryotic translation initiation factor 5A.	Predicted protein.	0.790
VDBG_00750	VDBG_01982	C9S757	C9SBY9	Eukaryotic translation initiation factor 5A.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.983
VDBG_00750	VDBG_04914	C9S757	C9SIN2	Eukaryotic translation initiation factor 5A.	Eukaryotic translation initiation factor 2 subunit gamma.	0.650
VDBG_01125	GUF1	C9S5A8	C9SGZ1	S4 RNA-binding domain-containing protein.	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	0.613
VDBG_01125	VDBG_00750	C9S5A8	C9S757	S4 RNA-binding domain-containing protein.	Eukaryotic translation initiation factor 5A.	0.790
VDBG_01125	VDBG_01805	C9S5A8	C9SBG2	S4 RNA-binding domain-containing protein.	Woronin body major protein.	0.790
VDBG_01125	VDBG_04321	C9S5A8	C9SGZ2	S4 RNA-binding domain-containing protein.	Uncharacterized protein.	0.613
VDBG_01125	VDBG_04441	C9S5A8	C9SJH0	S4 RNA-binding domain-containing protein.	ATP-binding cassette sub-family E member 1.	0.642
VDBG_01125	VDBG_04914	C9S5A8	C9SIN2	S4 RNA-binding domain-containing protein.	Eukaryotic translation initiation factor 2 subunit gamma.	0.899
VDBG_01127	GUF1	C9S5B0	C9SGZ1	Predicted protein.	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	0.613
VDBG_01127	VDBG_00750	C9S5B0	C9S757	Predicted protein.	Eukaryotic translation initiation factor 5A.	0.790