(21 nodes) Sterol transport network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_04656	Oxysterol-binding protein; Belongs to the OSBP family. (471 aa)
	VDBG_00544	Oxysterol-binding protein. (982 aa)
	VDBG_00711	Oxysterol-binding protein. (1252 aa)
	VDBG_00950	Phosphatidylglycerol/phosphatidylinositol transfer protein. (179 aa)
	VDBG_01394	Kes1; Belongs to the OSBP family. (418 aa)
	VDBG_01028	GRAM domain-containing protein. (744 aa)
	VDBG_02157	Kes1; Belongs to the OSBP family. (298 aa)
	VDBG_02262	SCP domain-containing protein; Belongs to the CRISP family. (169 aa)
	VDBG_03265	Uncharacterized protein. (525 aa)
	VDBG_09595	PRY1; Belongs to the CRISP family. (194 aa)
	VDBG_04345	Uncharacterized protein. (648 aa)
	VDBG_04346	Uncharacterized protein. (259 aa)
	VDBG_05604	Non-specific lipid-transfer protein. (273 aa)
	VDBG_06721	SipA3. (482 aa)
	VDBG_06722	Uncharacterized protein. (269 aa)
	VDBG_06791	Non-specific serine/threonine protein kinase. (778 aa)
	VDBG_07622	PRY1; Belongs to the CRISP family. (213 aa)
	VDBG_07878	Niemann-Pick C1 protein. (158 aa)
	VDBG_07879	Niemann-Pick C1 protein. (552 aa)
	VDBG_07880	Vacuolar membrane protein. (89 aa)
	VDBG_07955	Non-specific serine/threonine protein kinase. (873 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_04345	VDBG_04346	C9SJ74	C9SJ75	Uncharacterized protein.	Uncharacterized protein.	0.727
VDBG_04346	VDBG_04345	C9SJ75	C9SJ74	Uncharacterized protein.	Uncharacterized protein.	0.727
VDBG_06721	VDBG_06722	C9SP96	C9SP97	SipA3.	Uncharacterized protein.	0.917
VDBG_06722	VDBG_06721	C9SP97	C9SP96	Uncharacterized protein.	SipA3.	0.917
VDBG_06791	VDBG_07955	C9SPG6	C9SST0	Non-specific serine/threonine protein kinase.	Non-specific serine/threonine protein kinase.	0.826
VDBG_07878	VDBG_07879	C9SSK3	C9SSK4	Niemann-Pick C1 protein.	Niemann-Pick C1 protein.	0.950
VDBG_07878	VDBG_07880	C9SSK3	C9SSK5	Niemann-Pick C1 protein.	Vacuolar membrane protein.	0.867
VDBG_07879	VDBG_07878	C9SSK4	C9SSK3	Niemann-Pick C1 protein.	Niemann-Pick C1 protein.	0.950
VDBG_07879	VDBG_07880	C9SSK4	C9SSK5	Niemann-Pick C1 protein.	Vacuolar membrane protein.	0.915
VDBG_07880	VDBG_07878	C9SSK5	C9SSK3	Vacuolar membrane protein.	Niemann-Pick C1 protein.	0.867
VDBG_07880	VDBG_07879	C9SSK5	C9SSK4	Vacuolar membrane protein.	Niemann-Pick C1 protein.	0.915
VDBG_07955	VDBG_06791	C9SST0	C9SPG6	Non-specific serine/threonine protein kinase.	Non-specific serine/threonine protein kinase.	0.826