(26 nodes) sno(s)RNA metabolic process network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00262	Exosome complex exonuclease RRP4. (353 aa)
	VDBG_00274	Zinc knuckle domain-containing protein. (692 aa)
	VDBG_00345	Uncharacterized protein. (228 aa)
	VDBG_00697	Ribonucleases P/MRP protein subunit. (569 aa)
	VDBG_00700	Exosome complex exonuclease RRP40. (245 aa)
	VDBG_02269	Uncharacterized protein. (176 aa)
	VDBG_01509	HIT-type domain-containing protein. (457 aa)
	VDBG_01546	Lariat debranching enzyme. (556 aa)
	VDBG_01653	Uncharacterized protein. (1085 aa)
	VDBG_01726	Plus3 domain-containing protein. (588 aa)
	VDBG_01977	Pre-mRNA-splicing factor cwc-24. (204 aa)
	VDBG_02016	Uncharacterized protein. (181 aa)
	VDBG_03033	Rpb7-binding protein seb1. (338 aa)
	VDBG_03034	CID domain-containing protein. (160 aa)
	VDBG_03343	HAD_SAK_1 domain-containing protein. (408 aa)
	VDBG_03613	3'-5' exonuclease domain-containing protein. (894 aa)
	VDBG_04322	DUF455 domain-containing protein. (157 aa)
	VDBG_05221	Ribonuclease. (426 aa)
	VDBG_05443	Nucleolar protein NOP58. (598 aa)
	VDBG_05847	RNase_PH domain-containing protein. (249 aa)
	VDBG_06976	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (575 aa)
	VDBG_08238	Rpp14 family protein. (199 aa)
	VDBG_08825	Uncharacterized protein. (237 aa)
	VDBG_09157	Poly(A) RNA polymerase cid14. (723 aa)
	VDBG_09372	rRNA 2'-O-methyltransferase fibrillarin. (292 aa)
	VDBG_09932	Exosome complex exonuclease RRP41. (155 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00262	VDBG_00345	C9S555	C9S5J1	Exosome complex exonuclease RRP4.	Uncharacterized protein.	0.974
VDBG_00262	VDBG_00700	C9S555	C9S6Y1	Exosome complex exonuclease RRP4.	Exosome complex exonuclease RRP40.	0.999
VDBG_00262	VDBG_02016	C9S555	C9SC23	Exosome complex exonuclease RRP4.	Uncharacterized protein.	0.999
VDBG_00262	VDBG_03613	C9S555	C9SGG4	Exosome complex exonuclease RRP4.	3'-5' exonuclease domain-containing protein.	0.412
VDBG_00262	VDBG_05443	C9S555	C9SKW6	Exosome complex exonuclease RRP4.	Nucleolar protein NOP58.	0.896
VDBG_00262	VDBG_05847	C9S555	C9SLS3	Exosome complex exonuclease RRP4.	RNase_PH domain-containing protein.	0.999
VDBG_00262	VDBG_09372	C9S555	C9SX72	Exosome complex exonuclease RRP4.	rRNA 2'-O-methyltransferase fibrillarin.	0.860
VDBG_00262	VDBG_09932	C9S555	C9SYF7	Exosome complex exonuclease RRP4.	Exosome complex exonuclease RRP41.	0.999
VDBG_00274	VDBG_00700	C9S567	C9S6Y1	Zinc knuckle domain-containing protein.	Exosome complex exonuclease RRP40.	0.491
VDBG_00274	VDBG_01653	C9S567	C9SAX0	Zinc knuckle domain-containing protein.	Uncharacterized protein.	0.548
VDBG_00274	VDBG_02016	C9S567	C9SC23	Zinc knuckle domain-containing protein.	Uncharacterized protein.	0.558
VDBG_00274	VDBG_04322	C9S567	C9SJ51	Zinc knuckle domain-containing protein.	DUF455 domain-containing protein.	0.483
VDBG_00274	VDBG_05847	C9S567	C9SLS3	Zinc knuckle domain-containing protein.	RNase_PH domain-containing protein.	0.528
VDBG_00274	VDBG_06976	C9S567	C9SR64	Zinc knuckle domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.483
VDBG_00274	VDBG_09157	C9S567	C9SW82	Zinc knuckle domain-containing protein.	Poly(A) RNA polymerase cid14.	0.917
VDBG_00274	VDBG_09932	C9S567	C9SYF7	Zinc knuckle domain-containing protein.	Exosome complex exonuclease RRP41.	0.559
VDBG_00345	VDBG_00262	C9S5J1	C9S555	Uncharacterized protein.	Exosome complex exonuclease RRP4.	0.974
VDBG_00345	VDBG_00700	C9S5J1	C9S6Y1	Uncharacterized protein.	Exosome complex exonuclease RRP40.	0.976
VDBG_00345	VDBG_02016	C9S5J1	C9SC23	Uncharacterized protein.	Uncharacterized protein.	0.967
VDBG_00345	VDBG_05443	C9S5J1	C9SKW6	Uncharacterized protein.	Nucleolar protein NOP58.	0.763