34 items (Verticillium alfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_08165	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy. (145 aa)
	VDBG_08321	Uncharacterized protein. (704 aa)
	VDBG_08344	GTP-binding protein ryh1. (194 aa)
	VDBG_08655	Trafficking protein particle complex subunit 6A. (228 aa)
	VDBG_09021	Uncharacterized protein. (395 aa)
	VDBG_09283	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily. (921 aa)
	VDBG_09685	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (567 aa)
	VDBG_10034	Uncharacterized protein. (417 aa)
	VDBG_10217	Cell division cycle protein; Belongs to the AAA ATPase family. (634 aa)
	VDBG_06878	Uncharacterized protein. (162 aa)
	VDBG_06877	Uncharacterized protein. (55 aa)
	VDBG_06868	NTF2 and RRM domain-containing protein. (392 aa)
	VDBG_04308	Trafficking protein particle complex subunit BET3. (189 aa)
	VDBG_03430	Vacuolar protein sorting 41. (1319 aa)
	VDBG_03023	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (759 aa)
	VDBG_01674	Phosphatidylinositol 3-kinase VPS34; Belongs to the PI3/PI4-kinase family. (470 aa)
	VDBG_01673	Uncharacterized protein. (49 aa)
	VDBG_01597	Uncharacterized protein. (388 aa)
	VDBG_01596	Uncharacterized protein. (280 aa)
	VDBG_01577	Vesicle transport v-SNARE protein. (230 aa)
	VDBG_02288	WD repeat domain phosphoinositide-interacting protein. (318 aa)
	VDBG_02253	Uncharacterized protein. (396 aa)
	VDBG_02211	Uncharacterized protein. (928 aa)
	VDBG_02202	Cerevisin; Belongs to the peptidase S8 family. (497 aa)
	VDBG_00929	Phosphoinositide 3-kinase regulatory subunit 4. (1521 aa)
	VDBG_00559	Vacuolar-sorting protein snf7. (223 aa)
	VDBG_00464	E3 ubiquitin-protein ligase. (791 aa)
	VDBG_07605	UBX domain-containing protein. (416 aa)
	VDBG_06729	ADP-ribosylation factor 1. (133 aa)
	VDBG_06176	ATG11 domain-containing protein. (292 aa)
	VDBG_06175	Uncharacterized protein. (972 aa)
	VDBG_05556	SNARE domain-containing protein; Belongs to the syntaxin family. (264 aa)
	VDBG_05513	GTP-binding protein ypt1. (202 aa)
	VDBG_04784	Uncharacterized protein. (118 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00929	VDBG_01673	C9S7T5	C9SAZ0	Phosphoinositide 3-kinase regulatory subunit 4.	Uncharacterized protein.	0.968
VDBG_00929	VDBG_01674	C9S7T5	C9SAZ1	Phosphoinositide 3-kinase regulatory subunit 4.	Phosphatidylinositol 3-kinase VPS34; Belongs to the PI3/PI4-kinase family.	0.996
VDBG_00929	VDBG_02288	C9S7T5	C9S9W6	Phosphoinositide 3-kinase regulatory subunit 4.	WD repeat domain phosphoinositide-interacting protein.	0.510
VDBG_00929	VDBG_05556	C9S7T5	C9SL79	Phosphoinositide 3-kinase regulatory subunit 4.	SNARE domain-containing protein; Belongs to the syntaxin family.	0.556
VDBG_00929	VDBG_06175	C9S7T5	C9SMQ1	Phosphoinositide 3-kinase regulatory subunit 4.	Uncharacterized protein.	0.404
VDBG_00929	VDBG_06176	C9S7T5	C9SMQ2	Phosphoinositide 3-kinase regulatory subunit 4.	ATG11 domain-containing protein.	0.404
VDBG_00929	VDBG_06877	C9S7T5	C9SPQ2	Phosphoinositide 3-kinase regulatory subunit 4.	Uncharacterized protein.	0.939
VDBG_00929	VDBG_08165	C9S7T5	C9STE0	Phosphoinositide 3-kinase regulatory subunit 4.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	0.947
VDBG_00929	VDBG_09283	C9S7T5	C9SWK8	Phosphoinositide 3-kinase regulatory subunit 4.	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.	0.751
VDBG_00929	VDBG_09685	C9S7T5	C9SXR0	Phosphoinositide 3-kinase regulatory subunit 4.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.910
VDBG_01577	VDBG_03430	C9SAM0	C9SFI8	Vesicle transport v-SNARE protein.	Vacuolar protein sorting 41.	0.973
VDBG_01577	VDBG_05513	C9SAM0	C9SL36	Vesicle transport v-SNARE protein.	GTP-binding protein ypt1.	0.552
VDBG_01577	VDBG_05556	C9SAM0	C9SL79	Vesicle transport v-SNARE protein.	SNARE domain-containing protein; Belongs to the syntaxin family.	0.992
VDBG_01577	VDBG_06729	C9SAM0	C9SPA4	Vesicle transport v-SNARE protein.	ADP-ribosylation factor 1.	0.730
VDBG_01577	VDBG_08344	C9SAM0	C9STS3	Vesicle transport v-SNARE protein.	GTP-binding protein ryh1.	0.797
VDBG_01577	VDBG_10217	C9SAM0	C9SZ92	Vesicle transport v-SNARE protein.	Cell division cycle protein; Belongs to the AAA ATPase family.	0.402
VDBG_01596	VDBG_01597	C9SAN9	C9SAP0	Uncharacterized protein.	Uncharacterized protein.	0.928
VDBG_01597	VDBG_01596	C9SAP0	C9SAN9	Uncharacterized protein.	Uncharacterized protein.	0.928
VDBG_01673	VDBG_00929	C9SAZ0	C9S7T5	Uncharacterized protein.	Phosphoinositide 3-kinase regulatory subunit 4.	0.968
VDBG_01673	VDBG_05556	C9SAZ0	C9SL79	Uncharacterized protein.	SNARE domain-containing protein; Belongs to the syntaxin family.	0.460