STRINGSTRING
VDBG_01137 VDBG_01137 VDBG_00361 VDBG_00361 VDBG_00444 VDBG_00444 VDBG_01265 VDBG_01265 VDBG_01296 VDBG_01296 VDBG_01302 VDBG_01302 VDBG_00775 VDBG_00775 VDBG_01446 VDBG_01446 VDBG_00052 VDBG_00052 VDBG_00138 VDBG_00138 VDBG_01082 VDBG_01082 VDBG_02128 VDBG_02128 VDBG_02226 VDBG_02226 VDBG_02371 VDBG_02371 VDBG_01586 VDBG_01586 VDBG_01703 VDBG_01703 VDBG_01969 VDBG_01969 VDBG_01980 VDBG_01980 MET3 MET3 VDBG_02071 VDBG_02071 VDBG_03087 VDBG_03087 VDBG_03094 VDBG_03094 VDBG_02553 VDBG_02553 VDBG_03344 VDBG_03344 VDBG_03346 VDBG_03346 VDBG_03362 VDBG_03362 VDBG_03424 VDBG_03424 VDBG_03482 VDBG_03482 VDBG_03484 VDBG_03484 VDBG_04315 VDBG_04315 VDBG_03761 VDBG_03761 VDBG_04487 VDBG_04487 VDBG_04549 VDBG_04549 VDBG_04618 VDBG_04618 VDBG_04619 VDBG_04619 VDBG_04700 VDBG_04700 uba4 uba4 VDBG_04322 VDBG_04322 VDBG_04447 VDBG_04447 VDBG_05760 VDBG_05760 VDBG_05215 VDBG_05215 VDBG_05325 VDBG_05325 VDBG_05416 VDBG_05416 VDBG_05512 VDBG_05512 VDBG_05690 VDBG_05690 VDBG_05691 VDBG_05691 VDBG_05692 VDBG_05692 VDBG_05863 VDBG_05863 VDBG_05873 VDBG_05873 VDBG_06087 VDBG_06087 VDBG_06122 VDBG_06122 VDBG_06692 VDBG_06692 VDBG_06836 VDBG_06836 VDBG_06871 VDBG_06871 VDBG_06886 VDBG_06886 VDBG_07009 VDBG_07009 VDBG_07035 VDBG_07035 VDBG_07240 VDBG_07240 VDBG_07332 VDBG_07332 VDBG_07401 VDBG_07401 VDBG_07404 VDBG_07404 VDBG_07406 VDBG_07406 VDBG_06976 VDBG_06976 NCS2 NCS2 VDBG_07572 VDBG_07572 VDBG_08025 VDBG_08025 VDBG_08318 VDBG_08318 VDBG_08326 VDBG_08326 VDBG_08497 VDBG_08497 VDBG_08572 VDBG_08572 VDBG_08225 VDBG_08225 VDBG_08793 VDBG_08793 VDBG_09157 VDBG_09157 NCS6 NCS6 VDBG_09335 VDBG_09335 VDBG_09397 VDBG_09397 VDBG_09966 VDBG_09966 VDBG_10064 VDBG_10064
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_01137Galactose-1-phosphate uridylyltransferase. (373 aa)
VDBG_00361Uncharacterized protein. (75 aa)
VDBG_00444Choline-phosphate cytidylyltransferase. (476 aa)
VDBG_01265Predicted protein. (199 aa)
VDBG_01296Mitochondrial import protein MMP37. (553 aa)
VDBG_01302DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (1299 aa)
VDBG_00775Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released. (645 aa)
VDBG_01446Metallothionein-I gene transcription activator. (81 aa)
VDBG_00052DNA polymerase. (1055 aa)
VDBG_00138DNA-directed RNA polymerase II. (75 aa)
VDBG_01082DNA-directed RNA polymerases I. (231 aa)
VDBG_02128DNA-dependent RNA polymerase I subunit A43. (383 aa)
VDBG_02226Poly(A) RNA polymerase cid11. (1162 aa)
VDBG_02371Nicotinamide-nucleotide adenylyltransferase; Belongs to the eukaryotic NMN adenylyltransferase family. (266 aa)
VDBG_01586UmuC domain-containing protein. (609 aa)
VDBG_01703Ethanolamine-phosphate cytidylyltransferase. (445 aa)
VDBG_01969DNA polymerase IV. (631 aa)
VDBG_01980DNA polymerase. (1611 aa)
MET3Sulfate adenylyltransferase; Catalyzes the first intracellular reaction of sulfate assimilation, forming adenosine-5'-phosphosulfate (APS) from inorganic sulfate and ATP. Plays an important role in sulfate activation as a component of the biosynthesis pathway of sulfur-containing amino acids. In the N-terminal section; belongs to the sulfate adenylyltransferase family. (536 aa)
VDBG_02071RNA-dependent RNA polymerase. (1465 aa)
VDBG_03087DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2076 aa)
VDBG_03094Fic. (371 aa)
VDBG_02553Ap4A phosphorylase II. (335 aa)
VDBG_03344Translation initiation factor eIF-2B subunit epsilon. (741 aa)
VDBG_03346DNA primase; Belongs to the eukaryotic-type primase small subunit family. (495 aa)
VDBG_03362DNA polymerase subunit delta-2. (497 aa)
VDBG_03424DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1686 aa)
VDBG_03482Uncharacterized protein. (354 aa)
VDBG_03484MUS26. (299 aa)
VDBG_04315DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1260 aa)
VDBG_03761DNA-directed RNA polymerases I/II/III subunit 10. (76 aa)
VDBG_04487Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. (333 aa)
VDBG_04549Threonylcarbamoyl-AMP synthase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. (414 aa)
VDBG_04618MUS42. (171 aa)
VDBG_04619DNA polymerase IV. (563 aa)
VDBG_04700DNA-directed RNA polymerases I and III subunit RPAC1. (375 aa)
uba4Adenylyltransferase and sulfurtransferase uba4; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers urm1 and MOCS2A. Its N-terminus first activates urm1 and MOCS2A as acyl- adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to urm1 and MOCS2A to form thiocarboxylation (- COSH) of their C-terminus. The reaction probably involves hydrogen sulfide [...] (463 aa)
VDBG_04322DUF455 domain-containing protein. (157 aa)
VDBG_04447DNA polymerase lambda. (770 aa)
VDBG_05760Lipoyltransferase. (412 aa)
VDBG_05215Uncharacterized protein. (482 aa)
VDBG_05325DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1105 aa)
VDBG_05416RNA polymerase II subunit 3. (84 aa)
VDBG_05512Cytidylyltransferase family protein. (278 aa)
VDBG_05690Predicted protein. (372 aa)
VDBG_05691RNA-dependent RNA polymerase. (99 aa)
VDBG_05692RNA-dependent RNA polymerase. (139 aa)
VDBG_05863UTP--glucose-1-phosphate uridylyltransferase. (492 aa)
VDBG_05873DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1208 aa)
VDBG_06087RNA-dependent RNA polymerase. (1283 aa)
VDBG_06122DNA-directed RNA polymerase III subunit RPC8. (135 aa)
VDBG_06692mRNA-capping enzyme subunit alpha. (374 aa)
VDBG_06836DNA polymerase gamma. (963 aa)
VDBG_06871Pantetheine-phosphate adenylyltransferase family protein. (416 aa)
VDBG_06886DNA-directed RNA polymerases I and III subunit RPAC2. (146 aa)
VDBG_07009DNA polymerase. (1231 aa)
VDBG_07035DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1456 aa)
VDBG_07240UDP-N-acetylglucosamine pyrophosphorylase. (508 aa)
VDBG_07332DNA polymerase kappa. (407 aa)
VDBG_07401Predicted protein. (199 aa)
VDBG_07404tRNA(His) guanylyltransferase; Adds a GMP to the 5'-end of tRNA(His) after transcription and RNase P cleavage. (288 aa)
VDBG_07406DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1756 aa)
VDBG_06976Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (575 aa)
NCS2Cytoplasmic tRNA 2-thiolation protein 2; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with NCS6 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation. (397 aa)
VDBG_07572Uncharacterized protein. (302 aa)
VDBG_08025Mannose-1-phosphate guanyltransferase. (312 aa)
VDBG_08318Caffeine-induced death protein. (1079 aa)
VDBG_08326Uncharacterized protein. (129 aa)
VDBG_08497DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (282 aa)
VDBG_08572Phosphatidate cytidylyltransferase. (437 aa)
VDBG_08225tRNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (594 aa)
VDBG_08793DNA-directed RNA polymerases I. (149 aa)
VDBG_09157Poly(A) RNA polymerase cid14. (723 aa)
NCS6Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation. (399 aa)
VDBG_09335DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (262 aa)
VDBG_09397DNA primase large subunit. (413 aa)
VDBG_09966DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (390 aa)
VDBG_10064Mannose-1-phosphate guanyltransferase. (446 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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