(20 nodes) SCF ubiquitin ligase complex network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_10030	Cell division control protein. (638 aa)
	VDBG_00203	Ubiquitin-conjugating enzyme. (236 aa)
	VDBG_02459	Carotenoid cleavage dioxygenase. (485 aa)
	VDBG_02862	F-box/WD repeat-containing protein 1A. (1033 aa)
	VDBG_02521	Sulfur controller 2. (646 aa)
	VDBG_02548	Predicted protein. (240 aa)
	VDBG_02549	F-box/WD repeat-containing protein 1A. (262 aa)
	VDBG_03716	F-box protein pof7. (522 aa)
	VDBG_04795	Isoeugenol monooxygenase. (522 aa)
	VDBG_04362	Cullin-1. (112 aa)
	VDBG_04363	Cullin-1; Belongs to the cullin family. (235 aa)
	VDBG_04364	Predicted protein. (67 aa)
	VDBG_05332	Uncharacterized protein. (232 aa)
	VDBG_05333	Leucine Rich Repeat domain-containing protein. (411 aa)
	VDBG_05720	RBR-type E3 ubiquitin transferase. (233 aa)
	VDBG_07398	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (112 aa)
	VDBG_08639	RING-box protein. (119 aa)
	VDBG_08695	F-box/WD repeat-containing protein. (673 aa)
	VDBG_09051	SCF E3 ubiquitin ligase complex F-box protein grrA. (769 aa)
	VDBG_09845	Lignostilbene-alpha,beta-dioxygenase isozyme III. (168 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00203	VDBG_02521	C9S948	C9SDJ1	Ubiquitin-conjugating enzyme.	Sulfur controller 2.	0.603
VDBG_00203	VDBG_02548	C9S948	C9SDL8	Ubiquitin-conjugating enzyme.	Predicted protein.	0.428
VDBG_00203	VDBG_02549	C9S948	C9SDL9	Ubiquitin-conjugating enzyme.	F-box/WD repeat-containing protein 1A.	0.428
VDBG_00203	VDBG_02862	C9S948	C9SCD8	Ubiquitin-conjugating enzyme.	F-box/WD repeat-containing protein 1A.	0.428
VDBG_00203	VDBG_04362	C9S948	C9SJ91	Ubiquitin-conjugating enzyme.	Cullin-1.	0.732
VDBG_00203	VDBG_04363	C9S948	C9SJ92	Ubiquitin-conjugating enzyme.	Cullin-1; Belongs to the cullin family.	0.732
VDBG_00203	VDBG_04364	C9S948	C9SJ93	Ubiquitin-conjugating enzyme.	Predicted protein.	0.732
VDBG_00203	VDBG_08639	C9S948	C9SUR4	Ubiquitin-conjugating enzyme.	RING-box protein.	0.983
VDBG_00203	VDBG_08695	C9S948	C9SUX0	Ubiquitin-conjugating enzyme.	F-box/WD repeat-containing protein.	0.730
VDBG_00203	VDBG_09051	C9S948	C9SVX6	Ubiquitin-conjugating enzyme.	SCF E3 ubiquitin ligase complex F-box protein grrA.	0.428
VDBG_00203	VDBG_10030	C9S948	C9SYQ5	Ubiquitin-conjugating enzyme.	Cell division control protein.	0.868
VDBG_02521	VDBG_00203	C9SDJ1	C9S948	Sulfur controller 2.	Ubiquitin-conjugating enzyme.	0.603
VDBG_02521	VDBG_04362	C9SDJ1	C9SJ91	Sulfur controller 2.	Cullin-1.	0.779
VDBG_02521	VDBG_04363	C9SDJ1	C9SJ92	Sulfur controller 2.	Cullin-1; Belongs to the cullin family.	0.779
VDBG_02521	VDBG_04364	C9SDJ1	C9SJ93	Sulfur controller 2.	Predicted protein.	0.779
VDBG_02521	VDBG_08639	C9SDJ1	C9SUR4	Sulfur controller 2.	RING-box protein.	0.956
VDBG_02521	VDBG_09051	C9SDJ1	C9SVX6	Sulfur controller 2.	SCF E3 ubiquitin ligase complex F-box protein grrA.	0.444
VDBG_02548	VDBG_00203	C9SDL8	C9S948	Predicted protein.	Ubiquitin-conjugating enzyme.	0.428
VDBG_02548	VDBG_04362	C9SDL8	C9SJ91	Predicted protein.	Cullin-1.	0.613
VDBG_02548	VDBG_04363	C9SDL8	C9SJ92	Predicted protein.	Cullin-1; Belongs to the cullin family.	0.613