(42 nodes) Protein kinase regulator activity network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_08314	Maintenance of ploidy protein MOB2. (288 aa)
	VDBG_08934	Von Willebrand and RING finger domain-containing protein. (872 aa)
	VDBG_00045	G2/mitotic-specific cyclin cdc13; Belongs to the cyclin family. (704 aa)
	VDBG_01035	Inner centromere protein. (1199 aa)
	VDBG_00937	Cyclin domain-containing protein. (311 aa)
	VDBG_00690	G1/S-specific cyclin pas1. (496 aa)
	VDBG_00674	WD repeat-containing protein pop3. (318 aa)
	VDBG_00621	60S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (109 aa)
	VDBG_00367	cAMP-dependent protein kinase regulatory subunit. (216 aa)
	VDBG_09293	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (340 aa)
	VDBG_09283	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily. (921 aa)
	VDBG_01486	Conidiophore development protein hymA. (359 aa)
	VDBG_01116	C-type cyclin. (471 aa)
	VDBG_10171	Cyclin N-terminal domain-containing protein. (185 aa)
	VDBG_02451	PHO85 cyclin-7. (335 aa)
	VDBG_02531	Uncharacterized protein. (484 aa)
	VDBG_03387	Uncharacterized protein. (211 aa)
	VDBG_02770	Cyclin-U2-2. (358 aa)
	VDBG_04009	Cyclin-C; Belongs to the cyclin family. (320 aa)
	VDBG_04123	UPF0029 domain-containing protein. (272 aa)
	VDBG_04534	Maintenance of ploidy protein mob2. (353 aa)
	VDBG_04889	Cyclin-K; Belongs to the cyclin family. (437 aa)
	VDBG_04333	Uncharacterized protein. (590 aa)
	VDBG_05110	G2/mitotic-specific cyclin-B; Belongs to the cyclin family. (436 aa)
	VDBG_09267	Fungal specific transcription factor domain-containing protein. (851 aa)
	VDBG_09023	Cyclin CCL1. (365 aa)
	VDBG_06620	Uncharacterized protein. (208 aa)
	VDBG_06621	Uncharacterized protein. (226 aa)
	VDBG_07051	Translational activator GCN1. (2680 aa)
	VDBG_07123	Nuc-1 negative regulatory protein preg. (413 aa)
	VDBG_07157	Maintenance of ploidy protein mob1. (191 aa)
	VDBG_07196	G2/mitotic-specific cyclin-4; Belongs to the cyclin family. (233 aa)
	VDBG_07204	RNA polymerase II transcription factor B subunit 3. (353 aa)
	VDBG_07398	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (112 aa)
	VDBG_07443	Sds23/moc1. (551 aa)
	VDBG_07539	Uncharacterized protein. (346 aa)
	VDBG_07540	Rho-GAP domain-containing protein. (659 aa)
	VDBG_07542	Nuclear protein SNF4. (423 aa)
	VDBG_07725	Ste50p. (356 aa)
	VDBG_07919	PHO85 cyclin-1. (391 aa)
	VDBG_09687	DnaJ and TPR domain-containing protein. (510 aa)
	VDBG_08168	DBF zinc finger domain-containing protein. (508 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00045	VDBG_07204	C9S8H7	C9SQG9	G2/mitotic-specific cyclin cdc13; Belongs to the cyclin family.	RNA polymerase II transcription factor B subunit 3.	0.556
VDBG_00045	VDBG_07398	C9S8H7	C9SR13	G2/mitotic-specific cyclin cdc13; Belongs to the cyclin family.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.925
VDBG_00045	VDBG_09023	C9S8H7	C9SVU8	G2/mitotic-specific cyclin cdc13; Belongs to the cyclin family.	Cyclin CCL1.	0.662
VDBG_00674	VDBG_09283	C9S6V5	C9SWK8	WD repeat-containing protein pop3.	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.	0.909
VDBG_00690	VDBG_02451	C9S6X1	C9SAQ3	G1/S-specific cyclin pas1.	PHO85 cyclin-7.	0.483
VDBG_00937	VDBG_09023	C9S7U3	C9SVU8	Cyclin domain-containing protein.	Cyclin CCL1.	0.483
VDBG_01116	VDBG_04009	C9S9A4	C9SFB4	C-type cyclin.	Cyclin-C; Belongs to the cyclin family.	0.740
VDBG_01116	VDBG_04889	C9S9A4	C9SIK7	C-type cyclin.	Cyclin-K; Belongs to the cyclin family.	0.807
VDBG_01116	VDBG_07204	C9S9A4	C9SQG9	C-type cyclin.	RNA polymerase II transcription factor B subunit 3.	0.635
VDBG_01116	VDBG_09023	C9S9A4	C9SVU8	C-type cyclin.	Cyclin CCL1.	0.695
VDBG_01486	VDBG_08314	C9SAA0	C9STP3	Conidiophore development protein hymA.	Maintenance of ploidy protein MOB2.	0.646
VDBG_02451	VDBG_00690	C9SAQ3	C9S6X1	PHO85 cyclin-7.	G1/S-specific cyclin pas1.	0.483
VDBG_02531	VDBG_09283	C9SDK1	C9SWK8	Uncharacterized protein.	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.	0.997
VDBG_04009	VDBG_01116	C9SFB4	C9S9A4	Cyclin-C; Belongs to the cyclin family.	C-type cyclin.	0.740
VDBG_04009	VDBG_04333	C9SFB4	C9SJ62	Cyclin-C; Belongs to the cyclin family.	Uncharacterized protein.	0.522
VDBG_04009	VDBG_04889	C9SFB4	C9SIK7	Cyclin-C; Belongs to the cyclin family.	Cyclin-K; Belongs to the cyclin family.	0.815
VDBG_04009	VDBG_09023	C9SFB4	C9SVU8	Cyclin-C; Belongs to the cyclin family.	Cyclin CCL1.	0.642
VDBG_04123	VDBG_07051	C9SFR9	C9SQ16	UPF0029 domain-containing protein.	Translational activator GCN1.	0.450
VDBG_04333	VDBG_04009	C9SJ62	C9SFB4	Uncharacterized protein.	Cyclin-C; Belongs to the cyclin family.	0.522
VDBG_04333	VDBG_07204	C9SJ62	C9SQG9	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 3.	0.635