13 items (Verticillium alfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_03407	ATP-dependent Clp protease ATP-binding subunit clpX. (583 aa)
	VDBG_05034	DNL zinc finger domain-containing protein. (190 aa)
	VDBG_05412	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family. (247 aa)
	VDBG_06304	Mitochondrial inner membrane translocase subunit TIM44. (544 aa)
	VDBG_07760	Uncharacterized protein. (206 aa)
	VDBG_10015	Mitochondrial import inner membrane translocase subunit tim-17. (155 aa)
	VDBG_00665	Mitochondrial proteins import receptor. (622 aa)
	VDBG_00925	Mitochondrial import receptor subunit tom-20. (178 aa)
	VDBG_00976	Import inner membrane translocase subunit tim-21, mitochondrial. (232 aa)
	VDBG_00153	Mitochondrial import receptor subunit tom-40. (352 aa)
	VDBG_00168	Predicted protein. (53 aa)
	VDBG_02230	Uncharacterized protein. (115 aa)
	VDBG_03349	NADH-ubiquinone oxidoreductase 21.3 kDa subunit. (194 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00153	VDBG_00168	C9S8W9	C9S913	Mitochondrial import receptor subunit tom-40.	Predicted protein.	0.996
VDBG_00153	VDBG_00665	C9S8W9	C9S6U6	Mitochondrial import receptor subunit tom-40.	Mitochondrial proteins import receptor.	0.984
VDBG_00153	VDBG_00925	C9S8W9	C9S7T1	Mitochondrial import receptor subunit tom-40.	Mitochondrial import receptor subunit tom-20.	0.993
VDBG_00153	VDBG_00976	C9S8W9	C9S7Y2	Mitochondrial import receptor subunit tom-40.	Import inner membrane translocase subunit tim-21, mitochondrial.	0.678
VDBG_00153	VDBG_03349	C9S8W9	C9SDZ3	Mitochondrial import receptor subunit tom-40.	NADH-ubiquinone oxidoreductase 21.3 kDa subunit.	0.615
VDBG_00153	VDBG_05034	C9S8W9	C9SJ02	Mitochondrial import receptor subunit tom-40.	DNL zinc finger domain-containing protein.	0.492
VDBG_00153	VDBG_05412	C9S8W9	C9SKT5	Mitochondrial import receptor subunit tom-40.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.639
VDBG_00153	VDBG_06304	C9S8W9	C9SN29	Mitochondrial import receptor subunit tom-40.	Mitochondrial inner membrane translocase subunit TIM44.	0.747
VDBG_00153	VDBG_07760	C9S8W9	C9SS85	Mitochondrial import receptor subunit tom-40.	Uncharacterized protein.	0.999
VDBG_00153	VDBG_10015	C9S8W9	C9SYP0	Mitochondrial import receptor subunit tom-40.	Mitochondrial import inner membrane translocase subunit tim-17.	0.738
VDBG_00168	VDBG_00153	C9S913	C9S8W9	Predicted protein.	Mitochondrial import receptor subunit tom-40.	0.996
VDBG_00168	VDBG_00665	C9S913	C9S6U6	Predicted protein.	Mitochondrial proteins import receptor.	0.958
VDBG_00168	VDBG_00925	C9S913	C9S7T1	Predicted protein.	Mitochondrial import receptor subunit tom-20.	0.987
VDBG_00168	VDBG_00976	C9S913	C9S7Y2	Predicted protein.	Import inner membrane translocase subunit tim-21, mitochondrial.	0.544
VDBG_00168	VDBG_02230	C9S913	C9S9Q8	Predicted protein.	Uncharacterized protein.	0.651
VDBG_00168	VDBG_03349	C9S913	C9SDZ3	Predicted protein.	NADH-ubiquinone oxidoreductase 21.3 kDa subunit.	0.429
VDBG_00168	VDBG_06304	C9S913	C9SN29	Predicted protein.	Mitochondrial inner membrane translocase subunit TIM44.	0.535
VDBG_00168	VDBG_07760	C9S913	C9SS85	Predicted protein.	Uncharacterized protein.	0.999
VDBG_00168	VDBG_10015	C9S913	C9SYP0	Predicted protein.	Mitochondrial import inner membrane translocase subunit tim-17.	0.497
VDBG_00665	VDBG_00153	C9S6U6	C9S8W9	Mitochondrial proteins import receptor.	Mitochondrial import receptor subunit tom-40.	0.984