42 items (Verticillium alfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00526	Beta-glucosidase. (794 aa)
	VDBG_01380	Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family. (1226 aa)
	VDBG_01406	Predicted protein. (114 aa)
	VDBG_01422	Endoglucanase EG-1. (233 aa)
	VDBG_04804	Mixed-linked glucanase. (316 aa)
	VDBG_03835	Thermostable beta-glucosidase B. (868 aa)
	VDBG_04300	Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family. (685 aa)
	VDBG_02084	Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family. (832 aa)
	VDBG_02246	Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family. (902 aa)
	VDBG_02432	Uncharacterized protein. (181 aa)
	VDBG_09249	Endoglucanase-1; Belongs to the glycosyl hydrolase 12 (cellulase H) family. (336 aa)
	VDBG_04030	Beta-glucosidase. (551 aa)
	VDBG_02556	Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family. (920 aa)
	VDBG_03312	Endoglucanase-1; Belongs to the glycosyl hydrolase 12 (cellulase H) family. (235 aa)
	VDBG_09073	Endoglucanase-4. (352 aa)
	VDBG_09046	Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family. (852 aa)
	VDBG_08593	Beta-glucosidase. (706 aa)
	VDBG_08570	Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family. (584 aa)
	VDBG_08474	Beta-glucosidase. (816 aa)
	VDBG_08009	Periplasmic beta-glucosidase. (774 aa)
	VDBG_07559	Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family. (818 aa)
	VDBG_01680	Taurine catabolism dioxygenase TauD. (412 aa)
	VDBG_03067	Beta-glucosidase. (804 aa)
	VDBG_03110	Endoglucanase-1; Belongs to the glycosyl hydrolase 12 (cellulase H) family. (242 aa)
	VDBG_03115	Glucanase; Belongs to the glycosyl hydrolase family 6. (357 aa)
	VDBG_07467	Endoglucanase-4. (257 aa)
	VDBG_06492	Endoglucanase-4. (200 aa)
	VDBG_06333	Glucanase; Belongs to the glycosyl hydrolase 7 (cellulase C) family. (269 aa)
	VDBG_06005	Uncharacterized protein. (151 aa)
	VDBG_05985	Beta-glucosidase. (492 aa)
	VDBG_05669	Glucanase; Belongs to the glycosyl hydrolase family 6. (373 aa)
	VDBG_05647	Beta-glucosidase. (792 aa)
	VDBG_05774	Cellulose-growth-specific protein. (229 aa)
	VDBG_03183	Glucanase; Belongs to the glycosyl hydrolase 7 (cellulase C) family. (458 aa)
	VDBG_03273	Periplasmic beta-glucosidase. (781 aa)
	VDBG_03293	Thermostable beta-glucosidase B. (113 aa)
	VDBG_03292	Thermostable beta-glucosidase B. (516 aa)
	VDBG_10050	Endoglucanase-4. (374 aa)
	VDBG_09983	Beta-glucosidase. (682 aa)
	VDBG_09958	Glucanase; Belongs to the glycosyl hydrolase family 6. (395 aa)
	VDBG_04418	Mixed-linked glucanase. (528 aa)
	VDBG_01219	Taurine catabolism dioxygenase TauD. (416 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00526	VDBG_01380	C9S6A6	C9S7Q4	Beta-glucosidase.	Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.	0.712
VDBG_00526	VDBG_01422	C9S6A6	C9S863	Beta-glucosidase.	Endoglucanase EG-1.	0.676
VDBG_00526	VDBG_02084	C9S6A6	C9S9B2	Beta-glucosidase.	Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.	0.720
VDBG_00526	VDBG_02246	C9S6A6	C9S9S4	Beta-glucosidase.	Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.	0.681
VDBG_00526	VDBG_02556	C9S6A6	C9SDW1	Beta-glucosidase.	Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.	0.699
VDBG_00526	VDBG_03067	C9S6A6	C9SCZ3	Beta-glucosidase.	Beta-glucosidase.	0.676
VDBG_00526	VDBG_03115	C9S6A6	C9SD41	Beta-glucosidase.	Glucanase; Belongs to the glycosyl hydrolase family 6.	0.651
VDBG_00526	VDBG_03183	C9S6A6	C9SDC2	Beta-glucosidase.	Glucanase; Belongs to the glycosyl hydrolase 7 (cellulase C) family.	0.675
VDBG_00526	VDBG_03292	C9S6A6	C9SDR3	Beta-glucosidase.	Thermostable beta-glucosidase B.	0.727
VDBG_00526	VDBG_03293	C9S6A6	C9SDR4	Beta-glucosidase.	Thermostable beta-glucosidase B.	0.457
VDBG_00526	VDBG_03835	C9S6A6	C9SHD2	Beta-glucosidase.	Thermostable beta-glucosidase B.	0.716
VDBG_00526	VDBG_04300	C9S6A6	C9SGX1	Beta-glucosidase.	Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.	0.715
VDBG_00526	VDBG_05647	C9S6A6	C9SLH0	Beta-glucosidase.	Beta-glucosidase.	0.680
VDBG_00526	VDBG_05669	C9S6A6	C9SLJ2	Beta-glucosidase.	Glucanase; Belongs to the glycosyl hydrolase family 6.	0.651
VDBG_00526	VDBG_06333	C9S6A6	C9SN58	Beta-glucosidase.	Glucanase; Belongs to the glycosyl hydrolase 7 (cellulase C) family.	0.675
VDBG_00526	VDBG_07559	C9S6A6	C9SRN4	Beta-glucosidase.	Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.	0.720
VDBG_00526	VDBG_08009	C9S6A6	C9SSY4	Beta-glucosidase.	Periplasmic beta-glucosidase.	0.718
VDBG_00526	VDBG_08474	C9S6A6	C9SU53	Beta-glucosidase.	Beta-glucosidase.	0.678
VDBG_00526	VDBG_08570	C9S6A6	C9SUE9	Beta-glucosidase.	Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.	0.724
VDBG_00526	VDBG_08593	C9S6A6	C9SUH2	Beta-glucosidase.	Beta-glucosidase.	0.681