STRINGSTRING
VDBG_02688 VDBG_02688 VDBG_03616 VDBG_03616 VDBG_03657 VDBG_03657 VDBG_03658 VDBG_03658 MCM7 MCM7 VDBG_04326 VDBG_04326 VDBG_05286 VDBG_05286 VDBG_05289 VDBG_05289 VDBG_06832 VDBG_06832 VDBG_08019 VDBG_08019
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_02688Predicted protein. (276 aa)
VDBG_03616Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (700 aa)
VDBG_03657Histone deacetylase clr3. (386 aa)
VDBG_03658Histone deacetylase clr3. (253 aa)
MCM7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (838 aa)
VDBG_04326DNA helicase; Belongs to the MCM family. (869 aa)
VDBG_05286Predicted protein. (474 aa)
VDBG_05289Predicted protein. (337 aa)
VDBG_06832Cullin-4B; Belongs to the cullin family. (777 aa)
VDBG_08019Heterochromatin protein one. (242 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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