STRINGSTRING
VDBG_04763 VDBG_04763 VDBG_05033 VDBG_05033 VDBG_04369 VDBG_04369 VDBG_01067 VDBG_01067 VDBG_01602 VDBG_01602 VDBG_01603 VDBG_01603 VDBG_04709 VDBG_04709 VDBG_06428 VDBG_06428 VDBG_00400 VDBG_00400 VDBG_01424 VDBG_01424 VDBG_00187 VDBG_00187 VDBG_08717 VDBG_08717 VDBG_08294 VDBG_08294
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_04763Nucleolar complex protein. (897 aa)
VDBG_05033DRIM domain-containing protein. (2566 aa)
VDBG_04369KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (319 aa)
VDBG_01067Bystin. (319 aa)
VDBG_01602WD repeat-containing protein. (399 aa)
VDBG_01603Ribosome biogenesis protein TSR1. (636 aa)
VDBG_04709Nucleolar complex protein. (546 aa)
VDBG_0642820S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (452 aa)
VDBG_00400rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (346 aa)
VDBG_01424Ribosomal RNA-processing protein. (269 aa)
VDBG_00187LTV1. (330 aa)
VDBG_0871740S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (262 aa)
VDBG_08294Serine/threonine-protein kinase RIO2. (416 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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