STRINGSTRING
VDBG_04322 VDBG_04322 VDBG_09853 VDBG_09853 VDBG_09348 VDBG_09348 VDBG_08787 VDBG_08787 VDBG_06998 VDBG_06998 VDBG_06976 VDBG_06976 VDBG_07186 VDBG_07186 VDBG_07127 VDBG_07127 VDBG_06706 VDBG_06706 VDBG_06144 VDBG_06144 VDBG_06143 VDBG_06143 VDBG_05130 VDBG_05130 VDBG_04712 VDBG_04712 VDBG_04531 VDBG_04531 VDBG_04181 VDBG_04181 VDBG_03540 VDBG_03540 VDBG_03450 VDBG_03450 VDBG_03034 VDBG_03034 VDBG_03033 VDBG_03033 VDBG_01726 VDBG_01726 VDBG_01069 VDBG_01069 VDBG_01002 VDBG_01002 CLP1 CLP1 VDBG_00519 VDBG_00519 VDBG_00415 VDBG_00415
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_04322DUF455 domain-containing protein. (157 aa)
VDBG_09853Cft-1. (1349 aa)
VDBG_09348DUF618 domain-containing protein. (409 aa)
VDBG_08787Polyadenylation factor subunit 2. (518 aa)
VDBG_06998WD repeat-containing protein. (384 aa)
VDBG_06976Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (575 aa)
VDBG_07186mRNA 3'-end-processing protein YTH1. (212 aa)
VDBG_07127CID domain-containing protein. (672 aa)
VDBG_06706Cleavage and polyadenylation specificity factor subunit 5. (268 aa)
VDBG_06144DUF3453 domain-containing protein. (236 aa)
VDBG_06143Uncharacterized protein. (55 aa)
VDBG_05130RPOL4c domain-containing protein. (160 aa)
VDBG_04712RNA-binding protein. (324 aa)
VDBG_04531Uncharacterized protein. (383 aa)
VDBG_04181Serine/threonine-protein kinase crk1; Belongs to the protein kinase superfamily. (413 aa)
VDBG_03540mRNA 3'-end-processing protein RNA14. (935 aa)
VDBG_03450Cleavage and polyadenylation specificity factor subunit 2. (739 aa)
VDBG_03034CID domain-containing protein. (160 aa)
VDBG_03033Rpb7-binding protein seb1. (338 aa)
VDBG_01726Plus3 domain-containing protein. (588 aa)
VDBG_01069Cell division control protein. (345 aa)
VDBG_01002THO complex subunit 2. (2265 aa)
CLP1mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (459 aa)
VDBG_00519Nuclear polyadenylated RNA-binding protein. (473 aa)
VDBG_00415MPE1. (640 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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