(35 nodes) Intrinsic component of mitochondrial inner membrane network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_06711	Mitochondrial cytochrome c oxidase assembly factor. (90 aa)
	VDBG_06903	MICOS complex subunit MIC10; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane. (89 aa)
	VDBG_09964	Uncharacterized protein. (232 aa)
	VDBG_09962	Growth hormone-inducible transmembrane protein; Belongs to the BI1 family. (172 aa)
	PSD1	Phosphatidylserine decarboxylase proenzyme 1, mitochondrial; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine. Belongs to the phosphatidylserine decarboxylase family. PSD-B subfamily. Eukaryotic type I sub-subfamily. (525 aa)
	VDBG_08602	Mitochondrial phosphate carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (312 aa)
	VDBG_08193	NAPE-hydrolyzing phospholipase D. (422 aa)
	VDBG_08118	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. (635 aa)
	VDBG_10015	Mitochondrial import inner membrane translocase subunit tim-17. (155 aa)
	VDBG_07607	Mitochondrial export translocase Oxa1. (497 aa)
	VDBG_07385	Uncharacterized protein. (98 aa)
	VDBG_03632	Uncharacterized protein. (101 aa)
	VDBG_02632	Uncharacterized protein. (168 aa)
	VDBG_03349	NADH-ubiquinone oxidoreductase 21.3 kDa subunit. (194 aa)
	VDBG_02877	MCU domain-containing protein. (525 aa)
	VDBG_02821	Uncharacterized protein. (449 aa)
	VDBG_02057	Mitochondrial pyruvate carrier; Mediates the uptake of pyruvate into mitochondria. Belongs to the mitochondrial pyruvate carrier (MPC) (TC 2.A.105) family. (190 aa)
	VDBG_01654	Uncharacterized protein. (133 aa)
	VDBG_01576	Amine oxidase. (211 aa)
	VDBG_01575	Cytochrome c oxidase assembly protein COX11. (166 aa)
	VDBG_00234	Paraplegin. (841 aa)
	VDBG_00030	Msp1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (893 aa)
	VDBG_03633	Uncharacterized protein. (307 aa)
	VDBG_04257	MICOS complex subunit MIC12; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane. (291 aa)
	VDBG_03668	Cytochrome oxidase assembly. (216 aa)
	VDBG_03795	J domain-containing protein. (819 aa)
	VDBG_04572	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane. (255 aa)
	VDBG_04959	Mitochondrial phosphate carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (381 aa)
	VDBG_05023	Mitochondrial pyruvate carrier; Mediates the uptake of pyruvate into mitochondria. Belongs to the mitochondrial pyruvate carrier (MPC) (TC 2.A.105) family. (111 aa)
	VDBG_05049	FMP32. (186 aa)
	VDBG_04366	Uncharacterized protein. (291 aa)
	VDBG_05772	Mitochondrial phosphate carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (272 aa)
	VDBG_05259	RNA12. (856 aa)
	VDBG_05557	Uncharacterized protein. (126 aa)
	VDBG_06494	Mitochondrial fusion and transport protein Ugo1. (491 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PSD1	VDBG_07607	C9SXE3	C9SRT2	Phosphatidylserine decarboxylase proenzyme 1, mitochondrial; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine. Belongs to the phosphatidylserine decarboxylase family. PSD-B subfamily. Eukaryotic type I sub-subfamily.	Mitochondrial export translocase Oxa1.	0.640
VDBG_00030	VDBG_06494	C9S8B3	C9SNL9	Msp1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Mitochondrial fusion and transport protein Ugo1.	0.684
VDBG_00234	VDBG_02877	C9S979	C9SCF3	Paraplegin.	MCU domain-containing protein.	0.653
VDBG_00234	VDBG_10015	C9S979	C9SYP0	Paraplegin.	Mitochondrial import inner membrane translocase subunit tim-17.	0.492
VDBG_01575	VDBG_01576	C9SAL8	C9SAL9	Cytochrome c oxidase assembly protein COX11.	Amine oxidase.	0.871
VDBG_01575	VDBG_02877	C9SAL8	C9SCF3	Cytochrome c oxidase assembly protein COX11.	MCU domain-containing protein.	0.562
VDBG_01575	VDBG_05557	C9SAL8	C9SL80	Cytochrome c oxidase assembly protein COX11.	Uncharacterized protein.	0.593
VDBG_01575	VDBG_07607	C9SAL8	C9SRT2	Cytochrome c oxidase assembly protein COX11.	Mitochondrial export translocase Oxa1.	0.571
VDBG_01576	VDBG_01575	C9SAL9	C9SAL8	Amine oxidase.	Cytochrome c oxidase assembly protein COX11.	0.871
VDBG_01576	VDBG_02877	C9SAL9	C9SCF3	Amine oxidase.	MCU domain-containing protein.	0.406
VDBG_02057	VDBG_05023	C9SC64	C9SIZ1	Mitochondrial pyruvate carrier; Mediates the uptake of pyruvate into mitochondria. Belongs to the mitochondrial pyruvate carrier (MPC) (TC 2.A.105) family.	Mitochondrial pyruvate carrier; Mediates the uptake of pyruvate into mitochondria. Belongs to the mitochondrial pyruvate carrier (MPC) (TC 2.A.105) family.	0.965
VDBG_02877	VDBG_00234	C9SCF3	C9S979	MCU domain-containing protein.	Paraplegin.	0.653
VDBG_02877	VDBG_01575	C9SCF3	C9SAL8	MCU domain-containing protein.	Cytochrome c oxidase assembly protein COX11.	0.562
VDBG_02877	VDBG_01576	C9SCF3	C9SAL9	MCU domain-containing protein.	Amine oxidase.	0.406
VDBG_02877	VDBG_05049	C9SCF3	C9SJ17	MCU domain-containing protein.	FMP32.	0.523
VDBG_03632	VDBG_03633	C9SGK6	C9SGK7	Uncharacterized protein.	Uncharacterized protein.	0.925
VDBG_03633	VDBG_03632	C9SGK7	C9SGK6	Uncharacterized protein.	Uncharacterized protein.	0.925
VDBG_03795	VDBG_06903	C9SH92	C9SPS8	J domain-containing protein.	MICOS complex subunit MIC10; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.411
VDBG_04572	VDBG_06903	C9SHP0	C9SPS8	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	MICOS complex subunit MIC10; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.898
VDBG_05023	VDBG_02057	C9SIZ1	C9SC64	Mitochondrial pyruvate carrier; Mediates the uptake of pyruvate into mitochondria. Belongs to the mitochondrial pyruvate carrier (MPC) (TC 2.A.105) family.	Mitochondrial pyruvate carrier; Mediates the uptake of pyruvate into mitochondria. Belongs to the mitochondrial pyruvate carrier (MPC) (TC 2.A.105) family.	0.965