(34 nodes) Protein-containing complex localization network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00301	Uncharacterized protein. (603 aa)
	VDBG_00650	Nuclear envelope protein Cut8; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. (203 aa)
	VDBG_00775	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released. (645 aa)
	VDBG_00186	Nucleolar GTP-binding protein. (643 aa)
	VDBG_04694	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (198 aa)
	VDBG_04913	Uncharacterized protein. (534 aa)
	VDBG_04380	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (658 aa)
	VDBG_04432	Nuclear GTP-binding protein NUG1. (497 aa)
	VDBG_04441	ATP-binding cassette sub-family E member 1. (335 aa)
	VDBG_05773	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (686 aa)
	VDBG_05844	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (218 aa)
	VDBG_05979	Serine/threonine-protein kinase plo1. (1002 aa)
	VDBG_05995	mRNA export factor mex67. (664 aa)
	VDBG_09473	ATP-binding cassette sub-family F member 2. (632 aa)
	VDBG_09385	Uncharacterized protein. (329 aa)
	VDBG_09384	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (536 aa)
	TIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (246 aa)
	VDBG_08343	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (448 aa)
	VDBG_05999	Tyrosine-protein phosphatase CDC14. (642 aa)
	VDBG_08717	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (262 aa)
	VDBG_00187	LTV1. (330 aa)
	VDBG_02141	SGF29 C-terminal domain-containing protein. (355 aa)
	VDBG_02389	Bud site selection protein. (264 aa)
	VDBG_01505	Uncharacterized protein. (645 aa)
	VDBG_01911	Zuotin. (444 aa)
	VDBG_09813	Cell division control protein. (473 aa)
	VDBG_03392	Exportin-1. (1009 aa)
	VDBG_03881	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (523 aa)
	VDBG_07927	Sec3-PIP2_bind domain-containing protein. (1424 aa)
	VDBG_07433	Uncharacterized protein. (66 aa)
	VDBG_06811	Uncharacterized protein. (848 aa)
	VDBG_06729	ADP-ribosylation factor 1. (133 aa)
	VDBG_09677	DnaJ domain-containing protein. (506 aa)
	VDBG_03678	Ribosome biogenesis ATPase RIX7; Belongs to the AAA ATPase family. (507 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TIF6	VDBG_00186	C9SV08	C9S931	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Nucleolar GTP-binding protein.	0.980
TIF6	VDBG_03392	C9SV08	C9SE36	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Exportin-1.	0.487
TIF6	VDBG_03678	C9SV08	C9SGU7	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Ribosome biogenesis ATPase RIX7; Belongs to the AAA ATPase family.	0.487
TIF6	VDBG_03881	C9SV08	C9SEY6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.981
TIF6	VDBG_04380	C9SV08	C9SJA9	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.995
TIF6	VDBG_04432	C9SV08	C9SJG1	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Nuclear GTP-binding protein NUG1.	0.965
TIF6	VDBG_04441	C9SV08	C9SJH0	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	ATP-binding cassette sub-family E member 1.	0.686
TIF6	VDBG_04694	C9SV08	C9SI12	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.501
TIF6	VDBG_05773	C9SV08	C9SJQ0	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.873
TIF6	VDBG_07433	C9SV08	C9SRA8	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Uncharacterized protein.	0.974
TIF6	VDBG_08343	C9SV08	C9STS2	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.640
TIF6	VDBG_08717	C9SV08	C9SUZ2	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.779
TIF6	VDBG_09473	C9SV08	C9SXH3	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	ATP-binding cassette sub-family F member 2.	0.611
TIF6	VDBG_09677	C9SV08	C9SXQ2	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	DnaJ domain-containing protein.	0.599
VDBG_00186	TIF6	C9S931	C9SV08	Nucleolar GTP-binding protein.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	0.980
VDBG_00186	VDBG_00187	C9S931	C9S932	Nucleolar GTP-binding protein.	LTV1.	0.708
VDBG_00186	VDBG_03392	C9S931	C9SE36	Nucleolar GTP-binding protein.	Exportin-1.	0.501
VDBG_00186	VDBG_03678	C9S931	C9SGU7	Nucleolar GTP-binding protein.	Ribosome biogenesis ATPase RIX7; Belongs to the AAA ATPase family.	0.577
VDBG_00186	VDBG_03881	C9S931	C9SEY6	Nucleolar GTP-binding protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.840
VDBG_00186	VDBG_04380	C9S931	C9SJA9	Nucleolar GTP-binding protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.955