19 items (Verticillium alfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_04316	Uncharacterized protein. (107 aa)
	VDBG_02212	Cytochrome c oxidase-assembly factor COX16. (113 aa)
	VDBG_01654	Uncharacterized protein. (133 aa)
	VDBG_01829	SCO2. (159 aa)
	VDBG_01860	Uncharacterized protein. (345 aa)
	VDBG_02019	SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family. (318 aa)
	VDBG_03086	Cytochrome c oxidase assembly protein COX20, mitochondrial; Involved in the assembly of the cytochrome c oxidase complex. Belongs to the COX20 family. (214 aa)
	VDBG_03453	Uncharacterized protein. (142 aa)
	VDBG_03668	Cytochrome oxidase assembly. (216 aa)
	VDBG_04973	COX17 protein. (70 aa)
	VDBG_05050	Predicted protein. (174 aa)
	VDBG_05840	Cytochrome c oxidase assembly protein COX19. (108 aa)
	VDBG_06711	Mitochondrial cytochrome c oxidase assembly factor. (90 aa)
	VDBG_07363	COX assembly mitochondrial protein; Required for mitochondrial cytochrome c oxidase (COX) assembly and respiration; Belongs to the CMC family. (173 aa)
	VDBG_07385	Uncharacterized protein. (98 aa)
	VDBG_07802	Cytochrome c oxidase polypeptide IV. (194 aa)
	VDBG_07803	Predicted protein. (523 aa)
	VDBG_08766	MSS51. (302 aa)
	VDBG_09199	Uncharacterized protein. (76 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_01654	VDBG_01829	C9SAX1	C9SBI6	Uncharacterized protein.	SCO2.	0.442
VDBG_01654	VDBG_04316	C9SAX1	C9SGY7	Uncharacterized protein.	Uncharacterized protein.	0.510
VDBG_01654	VDBG_04973	C9SAX1	C9SIU1	Uncharacterized protein.	COX17 protein.	0.612
VDBG_01654	VDBG_07363	C9SAX1	C9SQX8	Uncharacterized protein.	COX assembly mitochondrial protein; Required for mitochondrial cytochrome c oxidase (COX) assembly and respiration; Belongs to the CMC family.	0.431
VDBG_01829	VDBG_01654	C9SBI6	C9SAX1	SCO2.	Uncharacterized protein.	0.442
VDBG_01829	VDBG_01860	C9SBI6	C9SBL7	SCO2.	Uncharacterized protein.	0.435
VDBG_01829	VDBG_02019	C9SBI6	C9SC26	SCO2.	SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.	0.776
VDBG_01829	VDBG_03453	C9SBI6	C9SFL1	SCO2.	Uncharacterized protein.	0.752
VDBG_01829	VDBG_04316	C9SBI6	C9SGY7	SCO2.	Uncharacterized protein.	0.518
VDBG_01829	VDBG_04973	C9SBI6	C9SIU1	SCO2.	COX17 protein.	0.729
VDBG_01860	VDBG_01829	C9SBL7	C9SBI6	Uncharacterized protein.	SCO2.	0.435
VDBG_01860	VDBG_04316	C9SBL7	C9SGY7	Uncharacterized protein.	Uncharacterized protein.	0.485
VDBG_01860	VDBG_04973	C9SBL7	C9SIU1	Uncharacterized protein.	COX17 protein.	0.611
VDBG_01860	VDBG_07363	C9SBL7	C9SQX8	Uncharacterized protein.	COX assembly mitochondrial protein; Required for mitochondrial cytochrome c oxidase (COX) assembly and respiration; Belongs to the CMC family.	0.431
VDBG_02019	VDBG_01829	C9SC26	C9SBI6	SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.	SCO2.	0.776
VDBG_02019	VDBG_03453	C9SC26	C9SFL1	SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.	Uncharacterized protein.	0.597
VDBG_02019	VDBG_03668	C9SC26	C9SGR4	SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.	Cytochrome oxidase assembly.	0.475
VDBG_02019	VDBG_04316	C9SC26	C9SGY7	SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.	Uncharacterized protein.	0.564
VDBG_02019	VDBG_04973	C9SC26	C9SIU1	SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.	COX17 protein.	0.626
VDBG_02019	VDBG_08766	C9SC26	C9SV41	SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.	MSS51.	0.717