(6 nodes) Nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_04322	DUF455 domain-containing protein. (157 aa)
	VDBG_03613	3'-5' exonuclease domain-containing protein. (894 aa)
	VDBG_01653	Uncharacterized protein. (1085 aa)
	VDBG_06976	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (575 aa)
	VDBG_06832	Cullin-4B; Belongs to the cullin family. (777 aa)
	VDBG_04530	CCCH zinc finger protein. (441 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_01653	VDBG_03613	C9SAX0	C9SGG4	Uncharacterized protein.	3'-5' exonuclease domain-containing protein.	0.595
VDBG_01653	VDBG_04322	C9SAX0	C9SJ51	Uncharacterized protein.	DUF455 domain-containing protein.	0.796
VDBG_01653	VDBG_04530	C9SAX0	C9SHJ8	Uncharacterized protein.	CCCH zinc finger protein.	0.547
VDBG_01653	VDBG_06976	C9SAX0	C9SR64	Uncharacterized protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.796
VDBG_03613	VDBG_01653	C9SGG4	C9SAX0	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.595
VDBG_04322	VDBG_01653	C9SJ51	C9SAX0	DUF455 domain-containing protein.	Uncharacterized protein.	0.796
VDBG_04530	VDBG_01653	C9SHJ8	C9SAX0	CCCH zinc finger protein.	Uncharacterized protein.	0.547
VDBG_06976	VDBG_01653	C9SR64	C9SAX0	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Uncharacterized protein.	0.796