19 items (Verticillium alfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_05790	Uncharacterized protein. (348 aa)
	VDBG_05513	GTP-binding protein ypt1. (202 aa)
	VDBG_06175	Uncharacterized protein. (972 aa)
	VDBG_06176	ATG11 domain-containing protein. (292 aa)
	VDBG_06688	MAP kinase-activated protein kinase. (745 aa)
	VDBG_00587	Atg2p. (1920 aa)
	VDBG_08165	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy. (145 aa)
	VDBG_09685	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (567 aa)
	VDBG_09807	PH domain-containing protein. (1392 aa)
	VDBG_10195	Autophagy protein. (199 aa)
	VDBG_00549	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. (250 aa)
	VDBG_06696	Sorting nexin-41. (464 aa)
	VDBG_01408	Predicted protein. (862 aa)
	VDBG_02288	WD repeat domain phosphoinositide-interacting protein. (318 aa)
	VDBG_03023	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (759 aa)
	VDBG_02531	Uncharacterized protein. (484 aa)
	VDBG_03419	WD repeat domain phosphoinositide-interacting protein. (340 aa)
	VDBG_03799	Beclin-1. (140 aa)
	VDBG_03804	Uncharacterized protein. (492 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00549	VDBG_00587	C9S6C9	C9S6I8	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	Atg2p.	0.629
VDBG_00549	VDBG_01408	C9S6C9	C9S809	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	Predicted protein.	0.781
VDBG_00549	VDBG_02288	C9S6C9	C9S9W6	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	WD repeat domain phosphoinositide-interacting protein.	0.624
VDBG_00549	VDBG_02531	C9S6C9	C9SDK1	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	Uncharacterized protein.	0.512
VDBG_00549	VDBG_03419	C9S6C9	C9SE86	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	WD repeat domain phosphoinositide-interacting protein.	0.976
VDBG_00549	VDBG_03799	C9S6C9	C9SH96	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	Beclin-1.	0.781
VDBG_00549	VDBG_05513	C9S6C9	C9SL36	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	GTP-binding protein ypt1.	0.502
VDBG_00549	VDBG_06175	C9S6C9	C9SMQ1	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	Uncharacterized protein.	0.481
VDBG_00549	VDBG_06176	C9S6C9	C9SMQ2	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	ATG11 domain-containing protein.	0.481
VDBG_00549	VDBG_06688	C9S6C9	C9SP63	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	MAP kinase-activated protein kinase.	0.983
VDBG_00549	VDBG_08165	C9S6C9	C9STE0	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	0.999
VDBG_00549	VDBG_09685	C9S6C9	C9SXR0	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.657
VDBG_00549	VDBG_09807	C9S6C9	C9SY32	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	PH domain-containing protein.	0.485
VDBG_00549	VDBG_10195	C9S6C9	C9SZ70	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	Autophagy protein.	0.988
VDBG_00587	VDBG_00549	C9S6I8	C9S6C9	Atg2p.	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	0.629
VDBG_00587	VDBG_01408	C9S6I8	C9S809	Atg2p.	Predicted protein.	0.483
VDBG_00587	VDBG_02288	C9S6I8	C9S9W6	Atg2p.	WD repeat domain phosphoinositide-interacting protein.	0.773
VDBG_00587	VDBG_02531	C9S6I8	C9SDK1	Atg2p.	Uncharacterized protein.	0.578
VDBG_00587	VDBG_03419	C9S6I8	C9SE86	Atg2p.	WD repeat domain phosphoinositide-interacting protein.	0.994
VDBG_00587	VDBG_03799	C9S6I8	C9SH96	Atg2p.	Beclin-1.	0.483