(7 nodes) Xenobiotic catabolic process network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_06415	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (421 aa)
	VDBG_08135	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (416 aa)
	VDBG_08481	3-ketoacyl-CoA thiolase. (262 aa)
	VDBG_08580	3-ketoacyl-CoA thiolase. (107 aa)
	VDBG_09607	Uncharacterized protein. (584 aa)
	VDBG_09625	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (352 aa)
	VDBG_09942	Nudix domain containing protein; Belongs to the Nudix hydrolase family. (150 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_08135	VDBG_08481	C9STB0	C9SU60	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	3-ketoacyl-CoA thiolase.	0.906
VDBG_08135	VDBG_09625	C9STB0	C9SWX4	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.905
VDBG_08481	VDBG_08135	C9SU60	C9STB0	3-ketoacyl-CoA thiolase.	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.906
VDBG_08481	VDBG_09625	C9SU60	C9SWX4	3-ketoacyl-CoA thiolase.	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.908
VDBG_08580	VDBG_09625	C9SUF9	C9SWX4	3-ketoacyl-CoA thiolase.	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.515
VDBG_09625	VDBG_08135	C9SWX4	C9STB0	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.905
VDBG_09625	VDBG_08481	C9SWX4	C9SU60	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	3-ketoacyl-CoA thiolase.	0.908
VDBG_09625	VDBG_08580	C9SWX4	C9SUF9	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	3-ketoacyl-CoA thiolase.	0.515