(63 nodes) Cell projection network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_01124	Septin-11; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (399 aa)
	VDBG_00338	BAR domain-containing protein. (442 aa)
	VDBG_00432	LIM domain-containing protein. (687 aa)
	VDBG_00500	Phytanoyl-CoA dioxygenase family protein. (298 aa)
	VDBG_01235	Predicted protein. (407 aa)
	VDBG_01309	Dual specificity phosphatase. (674 aa)
	VDBG_00775	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released. (645 aa)
	VDBG_01373	GTP-binding protein RHO1. (206 aa)
	VDBG_01434	Uncharacterized protein. (223 aa)
	VDBG_00090	Cytokinesis protein sepA. (842 aa)
	VDBG_02308	GTP-binding protein RHO3. (217 aa)
	VDBG_01486	Conidiophore development protein hymA. (359 aa)
	VDBG_01544	GTP-binding protein rho4. (229 aa)
	VDBG_01723	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (461 aa)
	VDBG_01733	MFS domain-containing protein. (362 aa)
	VDBG_02505	Fibronectin type III domain-containing protein. (764 aa)
	VDBG_01924	Predicted protein. (284 aa)
	VDBG_02826	Alpha-actinin-1. (717 aa)
	VDBG_02860	PB1 domain-containing protein. (267 aa)
	VDBG_02861	Rho guanine nucleotide exchange factor scd1. (636 aa)
	VDBG_03106	Predicted protein. (376 aa)
	VDBG_03107	Uncharacterized protein. (567 aa)
	VDBG_03333	Predicted protein. (110 aa)
	VDBG_03337	Linoleate diol synthase. (1070 aa)
	VDBG_02781	Uncharacterized protein. (317 aa)
	VDBG_04022	Plasma membrane fusion protein PRM1; Involved in cell fusion during mating by stabilizing the plasma membrane fusion event; Belongs to the PRM1 family. (359 aa)
	VDBG_03493	Scd2/ral3. (596 aa)
	VDBG_03544	GTPase-activating protein. (423 aa)
	VDBG_03734	Zn(2)-C6 fungal-type domain-containing protein. (841 aa)
	VDBG_04555	Glucan endo-1,3-alpha-glucosidase agn1. (1082 aa)
	VDBG_04728	Uncharacterized protein. (550 aa)
	VDBG_04471	Predicted protein. (354 aa)
	VDBG_05802	Gelsolin repeat-containing protein. (380 aa)
	VDBG_05118	Uncharacterized protein. (656 aa)
	VDBG_05269	GTP-binding protein RHO1. (129 aa)
	VDBG_05384	Bud site selection protein. (791 aa)
	VDBG_05519	Cell division control protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (338 aa)
	VDBG_05579	Linoleate diol synthase. (775 aa)
	VDBG_05580	Linoleate diol synthase. (118 aa)
	VDBG_05646	Flotillin domain-containing protein; Belongs to the band 7/mec-2 family. Flotillin subfamily. (347 aa)
	VDBG_05874	ADP-ribosylation factor 1; Belongs to the small GTPase superfamily. Arf family. (183 aa)
	VDBG_06016	Serine/threonine-protein kinase cbk1. (182 aa)
	VDBG_06017	Serine/threonine-protein kinase cot-1. (96 aa)
	VDBG_06364	Serine/threonine-protein kinase cot-1. (658 aa)
	VDBG_06533	Phospholipid-transporting ATPase. (1298 aa)
	VDBG_06791	Non-specific serine/threonine protein kinase. (778 aa)
	VDBG_07038	Uncharacterized protein. (256 aa)
	VDBG_07154	Aimless RasGEF. (945 aa)
	VDBG_07824	Phosducin. (290 aa)
	VDBG_07927	Sec3-PIP2_bind domain-containing protein. (1424 aa)
	VDBG_07955	Non-specific serine/threonine protein kinase. (873 aa)
	VDBG_08015	Uncharacterized protein. (593 aa)
	VDBG_08665	CRIB domain-containing protein. (787 aa)
	VDBG_08700	Cell division control protein. (185 aa)
	VDBG_08720	Protein phosphatase PP2A regulatory subunit A. (583 aa)
	VDBG_08891	Coronin; Belongs to the WD repeat coronin family. (616 aa)
	VDBG_08908	Cript family protein. (121 aa)
	VDBG_08934	Von Willebrand and RING finger domain-containing protein. (872 aa)
	VDBG_09324	UDP-N-acetylglucosaminyltransferase. (1133 aa)
	VDBG_09325	UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase. (234 aa)
	VDBG_09513	BAR domain-containing protein. (271 aa)
	VDBG_09946	Fum3p. (273 aa)
	VDBG_09959	Cyclic nucleotide-binding domain-containing protein. (894 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00090	VDBG_01373	C9S8M2	C9S7P7	Cytokinesis protein sepA.	GTP-binding protein RHO1.	0.656
VDBG_00090	VDBG_01544	C9S8M2	C9SAI7	Cytokinesis protein sepA.	GTP-binding protein rho4.	0.695
VDBG_00090	VDBG_02308	C9S8M2	C9S9Y6	Cytokinesis protein sepA.	GTP-binding protein RHO3.	0.782
VDBG_00090	VDBG_02860	C9S8M2	C9SCD6	Cytokinesis protein sepA.	PB1 domain-containing protein.	0.500
VDBG_00090	VDBG_02861	C9S8M2	C9SCD7	Cytokinesis protein sepA.	Rho guanine nucleotide exchange factor scd1.	0.500
VDBG_00090	VDBG_03493	C9S8M2	C9SFY0	Cytokinesis protein sepA.	Scd2/ral3.	0.610
VDBG_00090	VDBG_05269	C9S8M2	C9SKE2	Cytokinesis protein sepA.	GTP-binding protein RHO1.	0.761
VDBG_00090	VDBG_05384	C9S8M2	C9SKQ7	Cytokinesis protein sepA.	Bud site selection protein.	0.831
VDBG_00090	VDBG_08700	C9S8M2	C9SUX5	Cytokinesis protein sepA.	Cell division control protein.	0.714
VDBG_00338	VDBG_08700	C9S5I4	C9SUX5	BAR domain-containing protein.	Cell division control protein.	0.558
VDBG_00338	VDBG_09513	C9S5I4	C9SXL3	BAR domain-containing protein.	BAR domain-containing protein.	0.979
VDBG_00432	VDBG_01235	C9S5Y6	C9S664	LIM domain-containing protein.	Predicted protein.	0.513
VDBG_00432	VDBG_01373	C9S5Y6	C9S7P7	LIM domain-containing protein.	GTP-binding protein RHO1.	0.402
VDBG_00432	VDBG_04471	C9S5Y6	C9SJK0	LIM domain-containing protein.	Predicted protein.	0.513
VDBG_00432	VDBG_05269	C9S5Y6	C9SKE2	LIM domain-containing protein.	GTP-binding protein RHO1.	0.495
VDBG_00432	VDBG_08700	C9S5Y6	C9SUX5	LIM domain-containing protein.	Cell division control protein.	0.413
VDBG_01124	VDBG_05519	C9S5A7	C9SL42	Septin-11; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Cell division control protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.921
VDBG_01124	VDBG_08700	C9S5A7	C9SUX5	Septin-11; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Cell division control protein.	0.511
VDBG_01235	VDBG_00432	C9S664	C9S5Y6	Predicted protein.	LIM domain-containing protein.	0.513
VDBG_01309	VDBG_02860	C9S723	C9SCD6	Dual specificity phosphatase.	PB1 domain-containing protein.	0.616