(17 nodes) Ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway network (Verticillium alfalfae)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_08340	Uncharacterized protein. (252 aa)
	VDBG_09743	VHS domain-containing protein. (106 aa)
	VDBG_09427	Endosome protein. (354 aa)
	VDBG_08046	Vacuolar protein-sorting-associated protein. (161 aa)
	VDBG_07830	DOA4-independent degradation protein. (201 aa)
	VDBG_07511	USP domain-containing protein; Belongs to the peptidase C19 family. (1063 aa)
	VDBG_06626	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (262 aa)
	VDBG_06213	Glutamate carboxypeptidase. (815 aa)
	VDBG_05235	Vacuolar protein-sorting-associated protein. (228 aa)
	VDBG_04313	ESCRT-I component. (525 aa)
	VDBG_03677	Charged multivesicular body protein. (198 aa)
	VDBG_04225	Transmembrane E3 ubiquitin-protein ligase. (849 aa)
	VDBG_03495	Vacuolar protein-sorting-associated protein. (541 aa)
	VDBG_03865	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (238 aa)
	VDBG_03272	STAM-binding protein. (534 aa)
	VDBG_00559	Vacuolar-sorting protein snf7. (223 aa)
	VDBG_00464	E3 ubiquitin-protein ligase. (791 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00464	VDBG_07511	C9S618	C9SRI6	E3 ubiquitin-protein ligase.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.785
VDBG_00464	VDBG_09743	C9S618	C9SXW8	E3 ubiquitin-protein ligase.	VHS domain-containing protein.	0.440
VDBG_00559	VDBG_03495	C9S6D9	C9SFY2	Vacuolar-sorting protein snf7.	Vacuolar protein-sorting-associated protein.	0.943
VDBG_00559	VDBG_03677	C9S6D9	C9SGU6	Vacuolar-sorting protein snf7.	Charged multivesicular body protein.	0.997
VDBG_00559	VDBG_03865	C9S6D9	C9SEX0	Vacuolar-sorting protein snf7.	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.917
VDBG_00559	VDBG_04313	C9S6D9	C9SGY4	Vacuolar-sorting protein snf7.	ESCRT-I component.	0.903
VDBG_00559	VDBG_05235	C9S6D9	C9SKA8	Vacuolar-sorting protein snf7.	Vacuolar protein-sorting-associated protein.	0.998
VDBG_00559	VDBG_06626	C9S6D9	C9SP01	Vacuolar-sorting protein snf7.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.967
VDBG_00559	VDBG_07830	C9S6D9	C9SSF5	Vacuolar-sorting protein snf7.	DOA4-independent degradation protein.	0.998
VDBG_00559	VDBG_08046	C9S6D9	C9ST21	Vacuolar-sorting protein snf7.	Vacuolar protein-sorting-associated protein.	0.943
VDBG_03272	VDBG_05235	C9SDP3	C9SKA8	STAM-binding protein.	Vacuolar protein-sorting-associated protein.	0.833
VDBG_03272	VDBG_07830	C9SDP3	C9SSF5	STAM-binding protein.	DOA4-independent degradation protein.	0.764
VDBG_03495	VDBG_00559	C9SFY2	C9S6D9	Vacuolar protein-sorting-associated protein.	Vacuolar-sorting protein snf7.	0.943
VDBG_03495	VDBG_03677	C9SFY2	C9SGU6	Vacuolar protein-sorting-associated protein.	Charged multivesicular body protein.	0.988
VDBG_03495	VDBG_03865	C9SFY2	C9SEX0	Vacuolar protein-sorting-associated protein.	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.994
VDBG_03495	VDBG_04313	C9SFY2	C9SGY4	Vacuolar protein-sorting-associated protein.	ESCRT-I component.	0.970
VDBG_03495	VDBG_05235	C9SFY2	C9SKA8	Vacuolar protein-sorting-associated protein.	Vacuolar protein-sorting-associated protein.	0.917
VDBG_03495	VDBG_06626	C9SFY2	C9SP01	Vacuolar protein-sorting-associated protein.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.999
VDBG_03495	VDBG_07830	C9SFY2	C9SSF5	Vacuolar protein-sorting-associated protein.	DOA4-independent degradation protein.	0.935
VDBG_03495	VDBG_08046	C9SFY2	C9ST21	Vacuolar protein-sorting-associated protein.	Vacuolar protein-sorting-associated protein.	0.999