STRINGSTRING
VDBG_08340 VDBG_08340 VDBG_05235 VDBG_05235 VDBG_03495 VDBG_03495 VDBG_03865 VDBG_03865 VDBG_03272 VDBG_03272 VDBG_06213 VDBG_06213 VDBG_06626 VDBG_06626 VDBG_08046 VDBG_08046 VDBG_00559 VDBG_00559 VDBG_09743 VDBG_09743 VDBG_09427 VDBG_09427
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_08340Uncharacterized protein. (252 aa)
VDBG_05235Vacuolar protein-sorting-associated protein. (228 aa)
VDBG_03495Vacuolar protein-sorting-associated protein. (541 aa)
VDBG_03865Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (238 aa)
VDBG_03272STAM-binding protein. (534 aa)
VDBG_06213Glutamate carboxypeptidase. (815 aa)
VDBG_06626Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (262 aa)
VDBG_08046Vacuolar protein-sorting-associated protein. (161 aa)
VDBG_00559Vacuolar-sorting protein snf7. (223 aa)
VDBG_09743VHS domain-containing protein. (106 aa)
VDBG_09427Endosome protein. (354 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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